Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03606 ATGCCGCCAAACCCTGCGGAGGTGAAACGAGCGGAGCTTTTGAGAAATGATGGGAACAATTACTTCAAGAAAAACCGTTTTGGAGCAGCAATCGATGCTTACACCCAGGCGATAACGTTTTGCCCTAACATTCCGGTTTATTATACCAATCGTGCTCTGTGCCATCTCAAGCGCAATGAATGGGAGAGGGTTGAAGAAGACTCTAGAAGAGCAATTCAGCTGGACAGCAATTCGGTTAAGGCGCACTATATGTTGGGACTTGCGTTGCTACAGAAACAAGAGCTTCCGAAAGGAATTAAAGAATTGGAAAAGGCTTTGAATCTTGGGAGAGGTGCCAATCCACAAGGTTATATGGTAGAAGAAATATGGCAAGCGCTTGCAAAAGCAAAATACAGAGAGTGGGAACGTGCTTCATCCCAGCGATCTTGGGATTTGCAGAACTTGAAAGAAGCCTGTGTGTCTGCTATAAAGGAAAAACAATATCTCGGAGCTATCTCTGAATCAGAAGGATTTGTAGATGATGATGCTACTTCCTATTTGAAACATTTGGAGGCTATTGAAAGAGTTTTCAATAAAGCTGCAGAAGACGATATACCAGCTGAGATTCCAGATCATCTATGCTGTAGAATAACACTTGATATTTTTCATGACCCTGTAATCACTCCGAGTGGGCTTACATATGAGAGGGCAGTGCTTCTTGATCATCTTCAGAAGGTGGGTGGTTTTGATCCAATCACAAGGGAGAAACTTGATCCATCACAACTAGTACCAAACTTGGCCATTAAGGAAGCAGTCCATGAGTTTTTGGACAAACATGGGTGGGCTTACAAGATAGATTAA 840 0.4286 MPPNPAEVKRAELLRNDGNNYFKKNRFGAAIDAYTQAITFCPNIPVYYTNRALCHLKRNEWERVEEDSRRAIQLDSNSVKAHYMLGLALLQKQELPKGIKELEKALNLGRGANPQGYMVEEIWQALAKAKYREWERASSQRSWDLQNLKEACVSAIKEKQYLGAISESEGFVDDDATSYLKHLEAIERVFNKAAEDDIPAEIPDHLCCRITLDIFHDPVITPSGLTYERAVLLDHLQKVGGFDPITREKLDPSQLVPNLAIKEAVHEFLDKHGWAYKID 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03606 279 SMART tpr_5 45 78 IPR019734 GO:0005515
Vivi7g03606 279 SMART tpr_5 79 112 IPR019734 GO:0005515
Vivi7g03606 279 SMART tpr_5 11 44 IPR019734 GO:0005515
Vivi7g03606 279 SUPERFAMILY RING/U-box 195 276 - -
Vivi7g03606 279 ProSiteProfiles U-box domain profile. 201 275 IPR003613 GO:0004842|GO:0016567
Vivi7g03606 279 SMART Ubox_2 205 268 IPR003613 GO:0004842|GO:0016567
Vivi7g03606 279 CDD RING-Ubox_CHIP 202 272 IPR045202 -
Vivi7g03606 279 Gene3D Tetratricopeptide repeat domain 6 141 IPR011990 GO:0005515
Vivi7g03606 279 Pfam Tetratricopeptide repeat 18 43 IPR019734 GO:0005515
Vivi7g03606 279 Pfam U-box domain 202 274 IPR003613 GO:0004842|GO:0016567
Vivi7g03606 279 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Vivi7g03606 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 278 IPR013083 -
Vivi7g03606 279 SUPERFAMILY TPR-like 9 130 IPR011990 GO:0005515
Vivi7g03606 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 277 IPR045200 GO:0000209|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03606 Vivi-Chr7 101722986 101726885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03606 11 278 U-box Gene Family AT3G07370 64.552 2.99e-132 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03606 K09561 - gmx:100796519 455.292