Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03566 ATGCAAGGTGAATTAGAGTTGCCACCTGGTTTCAGATTTCATCCAACCGATGAAGAATTGGTGAATCATTACTTGTGTAGAAAATGTGCTGGCCAATCAATTTCTATTCCTGTTGTTAAAGAAGTTGATTTGTATAAGTTTGATCCATGGCAGCTTCCTGAAATGGGTTATCACAGTGAGAAAGAATGGTACTTTTTCTCTCCGAGGGATCGAAAATACCCGAACGGTTCCCGCATTAGTGTAGATCCAAATCTAATGGTCCATGCATTGGTGTGTCAATGTGTAAGAGCAGGAAGTCGTGTAGAAAATTCTTGTATTGTTGCTGGCATTTTTTCATATATTTGTAATATACTTTTCAATTCAAAGAGATGGAATGTTGCTTTATACTATTACACTATTATACGCTTTATTTATGAATCCATGACAAAAACAACGTTCAAAGAAAAAGACTTGCATTAA 459 0.3573 MQGELELPPGFRFHPTDEELVNHYLCRKCAGQSISIPVVKEVDLYKFDPWQLPEMGYHSEKEWYFFSPRDRKYPNGSRISVDPNLMVHALVCQCVRAGSRVENSCIVAGIFSYICNILFNSKRWNVALYYYTIIRFIYESMTKTTFKEKDLH 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03566 152 SUPERFAMILY NAC domain 3 79 IPR036093 GO:0003677|GO:0006355
Vivi7g03566 152 Pfam No apical meristem (NAM) protein 8 79 IPR003441 GO:0003677|GO:0006355
Vivi7g03566 152 Gene3D NAC domain 16 87 IPR036093 GO:0003677|GO:0006355
Vivi7g03566 152 ProSiteProfiles NAC domain profile. 7 152 IPR003441 GO:0003677|GO:0006355
Vivi7g03566 152 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03566 Vivi-Chr7 101337196 101338285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03566 5 78 NAC Transcription Factor Family AT1G01720 77.027 3.09e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi7g03566 NAM 2.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03566 - - vvo:131618059 326.635