Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03533 ATGGCTGCCGTAAGAATTGATTTTGTTAAGGAAATCAATCCCTCTAAGGAATCTTGGGACATTGTTGTTCAGGTGATTCGCTTATGGTTTGTACCAGATATGAACTCGAAAGAAAAGTTTTTTGCAATGGAGATGGTTCTAATGGATGAGAAGGGTGACAAGATTCAAGCTTCAGTTAGAAAAGCTCTGCTATCTCGATTTGAAAATAAGATACGTGAGGGAACAGTGTATAATTTCAAATCTTTTAGTGTCGCCGCTAATACCGGAGGATATAGGACCACAAAACATCAATTCAAGCTGAATTTGCAGAATGGCACGGTGGTTACAGAGATGTTGTGGGAATTCTGGCTTCGGTTGGACGTGAAAGAGTTTATGAGAAGAATCGTGCTACCCGAGAAATGTTGTTGTGCTTGCACAGTATTAGATGTTGTGGGAATTCTGGCTTCGGTTGGACGTGAAAGAGTTTATGAGAAGAATCGTGTAACTACTAAGTATAAGGTTATTGAGTTAGAGTCCAATGGTATGAAGCTTGAATGCACACTTTTTGGGCCATGTGTTGCCGAGCTTAATGCATACCTCCAATCAGGCTACCCGGGAAATGTTGTTGTGCTTGCACAGTATTTCAAAGTCAAAATGTATAATGGAAAAATTCAGTTGCAGAATGCAATGAATTGTACCAAGCTAATGTTCAACCCAGAAATTCCTGAGGCAAATAGTTTCAAACTCAATGATAACATTGGATCACCCACTCAACCATTCAGTTATATGAAGGATTCTTCTGATTTGAGTTTAGAAGAAGAGTTCTTAAATTTGAGTCAGCGCAAGACAATTGAGGAACTAAAAGACTGTCAAAATGAAATGGTTTGTGTTGTTTTAGGCACAATCAAACATGTTATTGGTGGGAATGATTGGCGGTATGCTGCACATGCCTGCAACAGGGGAGTTGTTGCGGATTCCAAAAGGTTATCCTGCCCTAAATGTAATAAGCATGTTTGGACCATTGTGACAAGGTACCGTGTCAAACTTAGAGTGATTGATGAAACCGACTCTGCTACTTTCGTGCTTTTTGATCATGATTGTTGTTTGCTGACAAATAAGACATGTTTTGATTTGATTGAGGAAATAAATCCTGAACTTGAGCCACCCATTGTGCCTAAAGTCATTGGTGATTTGGTTGAACAAACTTTTATTTTTAAGATAGATGTAAAGAATGATGTGAATTCAAGCTTTGAGCAGTCATTTCGCGTCAAAAAAGTTTGTGCCGACAAAGATATTGTCACTAAGTTCAAATCTGTTGTTAAGAATTCTGCGAGTTTTGAAGATGATTTGGCCGATGGTGTTGTTCAGAGTGAGATGGCTTCTATGGTTGTTCAGGATTTGAATTCCATATCTTGA 1395 0.3871 MAAVRIDFVKEINPSKESWDIVVQVIRLWFVPDMNSKEKFFAMEMVLMDEKGDKIQASVRKALLSRFENKIREGTVYNFKSFSVAANTGGYRTTKHQFKLNLQNGTVVTEMLWEFWLRLDVKEFMRRIVLPEKCCCACTVLDVVGILASVGRERVYEKNRVTTKYKVIELESNGMKLECTLFGPCVAELNAYLQSGYPGNVVVLAQYFKVKMYNGKIQLQNAMNCTKLMFNPEIPEANSFKLNDNIGSPTQPFSYMKDSSDLSLEEEFLNLSQRKTIEELKDCQNEMVCVVLGTIKHVIGGNDWRYAAHACNRGVVADSKRLSCPKCNKHVWTIVTRYRVKLRVIDETDSATFVLFDHDCCLLTNKTCFDLIEEINPELEPPIVPKVIGDLVEQTFIFKIDVKNDVNSSFEQSFRVKKVCADKDIVTKFKSVVKNSASFEDDLADGVVQSEMASMVVQDLNSIS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03533 464 CDD RPA1_DBD_A_like 21 108 - -
Vivi7g03533 464 Pfam Domain of unknown function DUF223 44 110 IPR003871 -
Vivi7g03533 464 SUPERFAMILY Nucleic acid-binding proteins 273 419 IPR012340 -
Vivi7g03533 464 CDD RPA1_DBD_C 275 419 IPR047192 -
Vivi7g03533 464 CDD RPA1_DBD_B_like 142 241 - -
Vivi7g03533 464 Gene3D - 5 110 IPR012340 -
Vivi7g03533 464 Pfam Replication factor-A C terminal domain 293 408 IPR013955 -
Vivi7g03533 464 Gene3D - 129 247 IPR012340 -
Vivi7g03533 464 SUPERFAMILY Nucleic acid-binding proteins 140 241 IPR012340 -
Vivi7g03533 464 Gene3D - 262 435 IPR012340 -
Vivi7g03533 464 PANTHER OS03G0429900 PROTEIN 9 421 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi7g03533 464 SUPERFAMILY Nucleic acid-binding proteins 8 110 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03533 Vivi-Chr7 100943107 100946522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03533 2 348 Core DNA Replication Machinery Family AT2G06510 24.251 1.20e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03533 - - vvo:131625632 427.557