Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03503 ATGGAGGAAGAAAAATTCATTGAGCTCAAAACTGTTACCACAAAGTTTGTGAATTCTTCTCCTACACCAAAAATTGTTAGAATCTCATATACTGATGAATATGCAACAGATTCTTCATCTGAAGAAGAACAACAAGAACATAGCTTTGTTCAACGTGTAACAACAAAGAAAATGGTGAAAGAGATTAGATTCCAAACATGTTCCACTCAATCCAACAAGAGAGTCAGTATGAAGAAACATGAAGATGGAGAAAACTACAATGTGGATGGTGAATGTGGTTTGAAACAAGTTCATCAAAAGTTCCGTGGTGTCCGAAGGCGGCAATGGGGGAGATGGGCGGCGGAGATTCGCGATCCTCGGCTCGGAAGGAGAAGATGGTTAGGAACTTATGATACGGCTGAAGAAGCTGCTTTGGTTTATGATAGAGCTGCAATTGAGTATAGAGGTGCTGATGCTGTTACAAATATTATGGAACCGCCGAAAAAACATCATCAACAACAACAAAAGAAAACATCGAATAATGTACGTGACCAAAATGTTAACGTCAATGTTCTTGGTGATTACGATTCTGTTGATAAGGATTGTAATAATGGTAGTTCATCTTCTTCATCTGTTACTGAAATTTGGAGCGAAAGAATAAGTGTGCAAGAATGGATTAGAGAGTTAACTGGAGAAGAATACTTAGATGAGTCTTTTGGTTCTCTTTGTTCCTATGATGAGCTTGTTCTTCCAACAATGGTATCTAATGAGAGTTATTGCATGGTTGATAATATTCCTTTTCATCTTGAAGAAGATTTTGAATCATGTAAATGGGAGGTTGATAATTACTTCAAATGA 837 0.3716 MEEEKFIELKTVTTKFVNSSPTPKIVRISYTDEYATDSSSEEEQQEHSFVQRVTTKKMVKEIRFQTCSTQSNKRVSMKKHEDGENYNVDGECGLKQVHQKFRGVRRRQWGRWAAEIRDPRLGRRRWLGTYDTAEEAALVYDRAAIEYRGADAVTNIMEPPKKHHQQQQKKTSNNVRDQNVNVNVLGDYDSVDKDCNNGSSSSSSVTEIWSERISVQEWIRELTGEEYLDESFGSLCSYDELVLPTMVSNESYCMVDNIPFHLEEDFESCKWEVDNYFK 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03503 278 SMART rav1_2 100 163 IPR001471 GO:0003700|GO:0006355
Vivi7g03503 278 SUPERFAMILY DNA-binding domain 100 156 IPR016177 GO:0003677
Vivi7g03503 278 CDD AP2 99 155 IPR001471 GO:0003700|GO:0006355
Vivi7g03503 278 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
Vivi7g03503 278 Gene3D AP2/ERF domain 99 157 IPR036955 GO:0003700|GO:0006355
Vivi7g03503 278 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 212 - -
Vivi7g03503 278 Pfam AP2 domain 100 149 IPR001471 GO:0003700|GO:0006355
Vivi7g03503 278 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Vivi7g03503 278 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03503 Vivi-Chr7 100725728 100726828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03503 5 173 AP2-EREBP Transcription Factor Family AT4G27950 44.565 1.30e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi7g03503 AP2 3.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03503 - - vvo:131660139 447.588