Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03457 ATGGAACCAATGAATAGAGGTGCAAATACATGTCTAGTGTGTAGACGTTTGAGAAGAAGATGTCGTAATGATTGTGAAATTGGCCAATACTTTCCATCAAATAGGAGTGATGATTTTCATAGTGTCCTAAGTCTTTTTGGGTTAACTAACCTTAGGAAAATCATGAGATCTGTAGAAGAACATCAAAGACAAACTCTTGCAAATTCTATTCTCTTGGAAGGCAAAGCTTGGAGACTTTATCCAGATAGAGGATTGTTGGGATATAAGATGGAGTTGGATGCTCAAATTTCTTCTACTTTGAATGAAGTAGAAATTGCTGAGAAGTTTTTGGCATATTTTAAGGATCAAACAAATCTAAACAATGAAAGAGGAGAATCAAGCAATATTGCATTCAAGAGAAATGAAGTTATTGAAGAGAAAGAGTTAAAGAAAGATGAAAAGGGAAAACAAGCTATCATTGAACAAAATGAACTAGAGATATATGATGAGGATGAAGACTTTGCCCCAAAGTAA 513 0.3411 MEPMNRGANTCLVCRRLRRRCRNDCEIGQYFPSNRSDDFHSVLSLFGLTNLRKIMRSVEEHQRQTLANSILLEGKAWRLYPDRGLLGYKMELDAQISSTLNEVEIAEKFLAYFKDQTNLNNERGESSNIAFKRNEVIEEKELKKDEKGKQAIIEQNELEIYDEDEDFAPK 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03457 170 Pfam Lateral organ boundaries (LOB) domain 11 107 IPR004883 -
Vivi7g03457 170 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vivi7g03457 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03457 Vivi-Chr7 100287194 100288008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03457 11 96 AS2 family AT2G19820 39.080 3.15e-17 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi7g03457 LOB 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03457 - - vvo:131618023 328.946