Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03429 ATGGATACAGTTACACCACCGTCAGTTACACCACCGTCAGTTACACCTCCGTCACTTCACCGTTCTTCTCCGTTACAGAATATCAGTCCCAGCATTCTCATTATCGTTACGATTCTCGCCATCACCGTTATCGTTTCCGTTGCTATCTTTTTCCTTCTCCGCCACCTCAACTGCAACCGTCTCCACCGTGTCGCCTCCGATCGATATCCTACTACATACACTGTATCGCATCCGAGCCACTGGATCTCTCCGGAGCTACGTCCTTCAGTCATTGACGCCTTGCCGCTGTTCCCGTACTCCTCTGTATCTCGCCGATCTTCCACTGTCACCGCCGCTGACTGCGCCGTATGCTTATCGAAGTTCCGAAACAGCGACCTCCTCCGTTCTCTACCTCTCTGTTTGCACGCATTCCATGCTGAATGTATAGACACGTGGCTCAGTTCGAATCTATCCTGTCCGCTCTGTCGCTCTTCCATTTTTACTTCCGATTCCGACCTCAACAAGATTCTCCGATCAACTTCTTCCGATAGTTTTCCTATCGAAATAGGAAACATAAGCCGGCGAAGACCGGAATCCGTCTCCGTCTCCGTCATCGAAATAGAAACCAATGCGGAATCCGTCAATGACGGAAGATCGTATTCCATTGGATCATTTGAGTATTATGTAGAGGAGCCATCGGAAGTTCTATTCACTCAAGATCACCGGAGAAGTATCTCCGATCAGAAAGATATTCACATTCCAGTACTCCCTGCGAATCCTCCAATATCACATGAAACGTTAGAGACCGTCACTGGAAATACCGGAAGTGGATACTGGCTGAAGGAGTACATGGACAGGCTTTCGGCTTCTATATCATCGCGAACGGCGTCGTTTCGTAGCTCCGGTAGGTTCTTCGGTGGTGGCGGAAGTAGTCGGAGAATTGAGCCGGTGGATTATGACGTGGAAGGTAACAGAATTGGTGAAGAGATTACCGAAATGTTTAGTTGGCTTTCGTCAGGGGTATGA 1005 0.4896 MDTVTPPSVTPPSVTPPSLHRSSPLQNISPSILIIVTILAITVIVSVAIFFLLRHLNCNRLHRVASDRYPTTYTVSHPSHWISPELRPSVIDALPLFPYSSVSRRSSTVTAADCAVCLSKFRNSDLLRSLPLCLHAFHAECIDTWLSSNLSCPLCRSSIFTSDSDLNKILRSTSSDSFPIEIGNISRRRPESVSVSVIEIETNAESVNDGRSYSIGSFEYYVEEPSEVLFTQDHRRSISDQKDIHIPVLPANPPISHETLETVTGNTGSGYWLKEYMDRLSASISSRTASFRSSGRFFGGGGSSRRIEPVDYDVEGNRIGEEITEMFSWLSSGV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03429 334 SMART ring_2 114 155 IPR001841 -
Vivi7g03429 334 Pfam Ring finger domain 113 156 IPR001841 -
Vivi7g03429 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 23 229 - -
Vivi7g03429 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 161 IPR013083 -
Vivi7g03429 334 CDD RING-H2_EL5-like 113 156 - -
Vivi7g03429 334 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Vivi7g03429 334 MobiDBLite consensus disorder prediction 1 23 - -
Vivi7g03429 334 SUPERFAMILY RING/U-box 92 162 - -
Vivi7g03429 334 FunFam E3 ubiquitin-protein ligase ATL6 76 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03429 Vivi-Chr7 99867150 99868571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03429 9 245 C3H Transcription Factor Family AT2G20030 30.769 4.51e-22 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03429 K10663 - gmx:100817751 276.559