Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03361 ATGCCTCCAAAGACGCCGAAGAGAGGGTCTGCATCCGGTGGTGCAAAGAGGGGTGGAAGACCATCGAGAGGGACTGCTAAGGCTGCACAGAATCAACCTGAACCTGTGGAGGAGAAGATGGTGGTTGAAGAGGAGCCTAAGGTGGAAGAGAATCCTGCTGTTGAGGAAAAGCCTGTGGTGGAAGAGAATTCTGTTGTTGAGGATAAAGCTATTGATGTGAATCAGACAACATCAGAGGCTGCAGGAGAATCCGTGTCTGTGATGAAAAAAGATGAAGAGGAGGTTAAAGAGTCTATAGATGAATATGAGAAGGATGAACGTCTAGATTTAGAGGATAATGATCCTGAATATGAACCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAACAGGAAGAGGGTCACGAGGTTGGAGAGGAAGTTGAGGAAGAAGCTGAAGACAATGTTGGTCAAGAAGAAGGTGAATCAGGTGAGGAAGAAGTCGAAGATGGTCATGATGAAATGGAGGAGGGTGAAGAGGATGATGAGCATGCTGGTGAGGAGCATGAGCACGAGCAGGCAGAGCTGGGTGACGTGGAAGAAGAGGAACATCGCGAGGTTGTGAAGGAGAGGCGAAAGCGGAAAGAATTTGAAGTGTTTGTTGGGGGCCTAGACAAGGATGCTACAGAAGATGATCTGAAGAAGGTTTTTGGTGAAGTTGGGGTTGTTACTGAGGTCAGGCTGATGATGAATCCTCAAACTAAAAAGAATAAGGGATTTGCATTCTTGCGTTTTGAAAACGTGGAGCAAGCTAAACGAGCGGTAGCAGAGCTTAGAAATCCAGTGATTAACGGCAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACCCTCTATTTAGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAACTGAAGCATTACGGAGTTACAAATGTTGAGGATGTGACTTTGGTTGAAGATTCTAATGATAAAGGAACAAACCGTGGATTTGCGTTCTTGGAATTTTCCTCACGTTCAGATGCTATGGATGCCTTTAAGAGGCTGCAGAAGAGGGATGTTGTGTTCGGAGTTGATAAGCCTGCAAAGGTTTCATTCGCAGATTCTTTTATTGACCCTGGTGATGAAATTATGTCGCAGGTTAAAACTGTATTTATCGATGCACTTCCTCCTTCATGGGATGAAGATTATGTCCGGAGTCTTCTCAAGAAATATGGTGAGGTTGAAAAGATTGAACTTGCCAGGAACATGCCAGCTGCTCGTAGGAAGGACTATGGGTTTGTTACCTTTGGCTCACATGATGCGGCTATAAGATGTGCTGAAAGCATTACTGGTACCGAATTGGGTGAAGGGGAGAAAAAGGCTAAAGTGAGGGCTAGGTTATCAAGGCCACTTCAAAGAGGCCGCGGAAAACACGTTGGTCGTGGGGACTACCGCCCGGGCCGTGGGTCCGCAATATTGTCAAGACCTTCTTGGAGCCGACCTGCACCCCGTAGTTTTTCTTCGCGCGGGGTAAGAGGAATTGGAAGTCGTGCACTTCCAGTCAGGCCTATTAGTGCTAGAGATAGACGCCCTGTTATGTCTATACCGGTTAGAAGTAGGCCACTACCTCCTCCCGTTAGATCTTATGATAGAAGAGCAGCTGCCCCTCCTGCATATTCAAAAAGTAGCTTGAAGCGAGATTATGGTCGGCGTGAGGATCTACCACCTCCAAGAAGTAGAGTTGCCGCAGATTATGGATCAAGAGTGGCCTCTGAAAGACGCCCATCTTATAGAGATTATCCACCCCGTGGATCTGACTACTCTGATCTCCCTAGAAGTTCATCTCGTGCTGCACCAAGGAGAGGTTATGTGGATGATGGTTACAGCCAAAGGTTTGAGAGGCCCCCTCCTCCACCCCCTCCCCATTCAAGTTATCGTGAAGGGCGCCCTCGTGATTATGATGCTCCTCTACCTGGGTCAAAACGTTCTTATGCTGCTGTGGATGATGTTCCCCCACGATACGCTGATACTGGTGCTCGTCAATCAAGAGCTCGAGTGGAATATGATTATGGGGGCAGTGCTTCACAGTATGGTGATGCTTATGGTGATAGAGTTGGAAGATCAAGTCTTGGATATGGCAGTGGCAGCCGAAGTTCTATTTCTGGTCAAGAATCACACGGAATGTATAGCAGTCGGCAGGGAACGGGTTATGGTGGAGGATCTTATGGTGGTAGTGATGTTGGAGGAGGCATGTACTCGTCAAGTTATGGTGGTGATTATGTTTCGCGTGGAAGTGATGTTGGCGGCAGCTCATATTCGTCAATGTATTCTGGCAGAGGTGCGGGCGGCGGTAGCAGTTACATGGGCAGCAGTGGATCGGGATCTTATTATTGA 2400 0.4725 MPPKTPKRGSASGGAKRGGRPSRGTAKAAQNQPEPVEEKMVVEEEPKVEENPAVEEKPVVEENSVVEDKAIDVNQTTSEAAGESVSVMKKDEEEVKESIDEYEKDERLDLEDNDPEYEPEEYGGVDYDEKEIEQEEGHEVGEEVEEEAEDNVGQEEGESGEEEVEDGHDEMEEGEEDDEHAGEEHEHEQAELGDVEEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLKKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELRNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDVTLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRSLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCAESITGTELGEGEKKAKVRARLSRPLQRGRGKHVGRGDYRPGRGSAILSRPSWSRPAPRSFSSRGVRGIGSRALPVRPISARDRRPVMSIPVRSRPLPPPVRSYDRRAAAPPAYSKSSLKRDYGRREDLPPPRSRVAADYGSRVASERRPSYRDYPPRGSDYSDLPRSSSRAAPRRGYVDDGYSQRFERPPPPPPPHSSYREGRPRDYDAPLPGSKRSYAAVDDVPPRYADTGARQSRARVEYDYGGSASQYGDAYGDRVGRSSLGYGSGSRSSISGQESHGMYSSRQGTGYGGGSYGGSDVGGGMYSSSYGGDYVSRGSDVGGSSYSSMYSGRGAGGGSSYMGSSGSGSYY 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03361 799 MobiDBLite consensus disorder prediction 37 68 - -
Vivi7g03361 799 Gene3D - 125 293 IPR012677 -
Vivi7g03361 799 MobiDBLite consensus disorder prediction 183 205 - -
Vivi7g03361 799 SUPERFAMILY RNA-binding domain, RBD 208 291 IPR035979 GO:0003676
Vivi7g03361 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 377 IPR000504 GO:0003723
Vivi7g03361 799 Gene3D - 380 495 IPR012677 -
Vivi7g03361 799 FunFam Heterogeneous nuclear ribonucleoprotein Q 294 376 - -
Vivi7g03361 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 390 472 IPR000504 GO:0003723
Vivi7g03361 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Vivi7g03361 799 SMART rrm1_1 294 373 IPR000504 GO:0003723
Vivi7g03361 799 SMART rrm1_1 391 466 IPR000504 GO:0003723
Vivi7g03361 799 SMART rrm1_1 214 287 IPR000504 GO:0003723
Vivi7g03361 799 MobiDBLite consensus disorder prediction 566 580 - -
Vivi7g03361 799 MobiDBLite consensus disorder prediction 1 205 - -
Vivi7g03361 799 MobiDBLite consensus disorder prediction 104 182 - -
Vivi7g03361 799 MobiDBLite consensus disorder prediction 773 799 - -
Vivi7g03361 799 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 142 293 - -
Vivi7g03361 799 CDD RRM_SF 295 362 - -
Vivi7g03361 799 MobiDBLite consensus disorder prediction 69 83 - -
Vivi7g03361 799 Coils Coil 85 108 - -
Vivi7g03361 799 CDD RRM_SF 392 457 - -
Vivi7g03361 799 FunFam RNA recognition water-stress protein1 380 501 - -
Vivi7g03361 799 MobiDBLite consensus disorder prediction 85 103 - -
Vivi7g03361 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 361 IPR000504 GO:0003723
Vivi7g03361 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 283 IPR000504 GO:0003723
Vivi7g03361 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 392 457 IPR000504 GO:0003723
Vivi7g03361 799 SUPERFAMILY RNA-binding domain, RBD 292 458 IPR035979 GO:0003676
Vivi7g03361 799 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 46 799 - -
Vivi7g03361 799 CDD RRM_SF 215 286 - -
Vivi7g03361 799 Gene3D - 294 376 IPR012677 -
Vivi7g03361 799 MobiDBLite consensus disorder prediction 534 683 - -
Vivi7g03361 799 MobiDBLite consensus disorder prediction 472 514 - -
Vivi7g03361 799 MobiDBLite consensus disorder prediction 713 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03361 Vivi-Chr7 99224972 99230093 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03361 215 460 Eukaryotic Initiation Factors Gene Family AT4G34110 23.643 9.79e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03361 - - aprc:113850151 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03361 7 99224972 99230093 Vivi7g03361 7 99224972 99230093 ECH
Vivi7g03361 7 99224972 99230093 Vivi6g03075 6 118581488 118587020 PCT