Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03360 ATGCCTCCAAAGACGCCGAAGAGAGGGTCTGCATCCGGTGGTGCAAAGAGGGGTGGAAGACCATCGAGAGGGACTGCTAAGGCTGCACAGAATCAACCTGAACCTGTGGAGGAGAAGATGGTGGTTGAAGAGGAGCCTAAGGTGGAAGAGAATCCTGCTGTTGAGGAAAAGCCTGTGGTGGAAGAGAATTCTGTTGTTGAGGATAAAGCTATTGATGTGAATCAGACAACATCAGAGGCTGCAGGAGAATCCGTGTCTGTGATGAAAAATGAAGAGGAGGTTAAAGAGTCTATAGATGAATATGAGAAGGATGAACGTCTAGATTTAGAGGATAATGATCCTGAATATGAACCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAACAGGAAGAGGGTCACGAGGTTGGAGAGGAAGTTGAGGAAGAAGCTGAAGACAATGTTGGTCAAGAAGAAGGTGAATCAGGTGAGGAAGAAGTCGAAGATGGTCATGATGAAATGGAGGAGGGTGAAGAGGATGATGAGCATGCTGGTGAGGAGCATGAGCACGAGCAGGCAGAGCTGGGTGACGTGGAAGAAGAGGAACATCGCGAGGTTGTGAAGGAGAGGCGAAAGCGGAAAGAATTTGAAGTGTTTGTTGGGGGCCTAGACAAGGATGCTACAGAAGATGATCTGAAGAAGGTTTTTGGTGAAGTTGGGGTTGTTACTGAGGTCAGGCTGATGATGAATCCTCAAACTAAAAAGAATAAGGGATTTGCATTCTTGCGTTTTGAAAACGTGGAGCAAGCTAAACGAGCGGTAGCAGAGCTTAGAAATCCAGTGATTAACGGCAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACCCTCTATTTAGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAACTGAAGCATTACGGAGTTACAAATGTTGAGGATGTGACTTTGGTTGAAGATTCTAATGATAAAGGAACAAACCGTGGATTTGCGTTCTTGGAATTTTCCTCACGTTCAGATGCTATGGATGCCTTTAAGAGGCTGCAGAAGAGGGATGTTGTGTTCGGAGTTGATAAGCCTGCAAAGGTTTCATTCGCAGATTCTTTTATTGACCCTGGTGATGAAATTATGTCGCAGGTTAAAACTGTATTTATCGATGCACTTCCTCCTTCATGGGATGAAGATTATGTCCGGAGTCTTCTCAAGAAATATGGTGAGGTTGAAAAGATTGAACTTGCCAGGAACATGCCAGCTGCTCGTAGGAAGGACTATGGGTTTGTTACCTTTGGCTCACATGATGCGGCTATAAGATGTGCTGAAAGCATTACTGGTACCGAATTGGGTGAAGGGGAGAAAAAGGCTAAAGTGAGGGCTAGGTTATCAAGGCCACTTCAAAGAGGCCGCGGAAAACACGTTGGTCGTGGGGACTACCGCCCGGGCCGTGGGTCCGCAATATTGTCAAGACCTTCTTGGAGCCGACCTGCACCCCGTAGTTTTTCTTCGCGCGGGGTAAGAGGAATTGGAAGTCGTGCACTTCCAGTCAGGCCTATTAGTGCTAGAGATAGACGCCCTGTTATGTCTATACCGGTTAGAAGTAGGCCACTACCTCCTCCCGTTAGATCTTATGATAGAAGAGCAGCTGCCCCTCCTGCATATTCAAAAAGTAGCTTGAAGCGAGATTATGGTCGGCGTGAGGATCTACCACCTCCAAGAAGTAGAGTTGCCGCAGATTATGGATCAAGAGTGGCCTCTGAAAGACGCCCATCTTATAGAGATTATCCACCCCGTGGATCTGACTACTCTGATCTCCCTAGAAGTTCATCTCGTGCTGCACCAAGGAGAGGTTATGTGGATGATGGTTACAGCCAAAGGTTTGAGAGGCCCCCTCCTCCACCCCCTCCCCATTCAAGTTATCGTGAAGGGCGCCCTCGTGATTATGATGCTCCTCTACCTGGGTCAAAACGTTCTTATGCTGCTGTGGATGATGTTCCCCCACGATACGCTGATACTGGTGCTCGTCAATCAAGAGCTCGAGTGGAATATGATTATGGGGGCAGTGCTTCACAGTATGGTGATGCTTATGGTGATAGAGTTGGAAGATCAAGTCTTGGATATGGCAGTGGCAGCCGAAGTTCTATTTCTGGTCAAGAATCACACGGAATGTATAGCAGTCGGCAGGGAACGGGTTATGGTGGAGGATCTTATGGTGGTAGTGATGTTGGAGGAGGCATGTACTCGTCAAGTTATGGTGGTGATTATGTTTCGCGTGGAAGTGATGTTGGCGGCAGCTCATATTCGTCAATGTATTCTGGCAGAGGTGCGGGCGGCGGTAGCAGTTACATGGGCAGCAGTGGATCGGGATCTTATTATTGA 2397 0.4727 MPPKTPKRGSASGGAKRGGRPSRGTAKAAQNQPEPVEEKMVVEEEPKVEENPAVEEKPVVEENSVVEDKAIDVNQTTSEAAGESVSVMKNEEEVKESIDEYEKDERLDLEDNDPEYEPEEYGGVDYDEKEIEQEEGHEVGEEVEEEAEDNVGQEEGESGEEEVEDGHDEMEEGEEDDEHAGEEHEHEQAELGDVEEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLKKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELRNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDVTLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRSLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCAESITGTELGEGEKKAKVRARLSRPLQRGRGKHVGRGDYRPGRGSAILSRPSWSRPAPRSFSSRGVRGIGSRALPVRPISARDRRPVMSIPVRSRPLPPPVRSYDRRAAAPPAYSKSSLKRDYGRREDLPPPRSRVAADYGSRVASERRPSYRDYPPRGSDYSDLPRSSSRAAPRRGYVDDGYSQRFERPPPPPPPHSSYREGRPRDYDAPLPGSKRSYAAVDDVPPRYADTGARQSRARVEYDYGGSASQYGDAYGDRVGRSSLGYGSGSRSSISGQESHGMYSSRQGTGYGGGSYGGSDVGGGMYSSSYGGDYVSRGSDVGGSSYSSMYSGRGAGGGSSYMGSSGSGSYY 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03360 798 MobiDBLite consensus disorder prediction 37 68 - -
Vivi7g03360 798 CDD RRM_SF 214 285 - -
Vivi7g03360 798 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 141 292 - -
Vivi7g03360 798 SUPERFAMILY RNA-binding domain, RBD 291 457 IPR035979 GO:0003676
Vivi7g03360 798 CDD RRM_SF 391 456 - -
Vivi7g03360 798 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 376 IPR000504 GO:0003723
Vivi7g03360 798 MobiDBLite consensus disorder prediction 69 84 - -
Vivi7g03360 798 MobiDBLite consensus disorder prediction 471 513 - -
Vivi7g03360 798 FunFam Heterogeneous nuclear ribonucleoprotein Q 293 375 - -
Vivi7g03360 798 MobiDBLite consensus disorder prediction 712 734 - -
Vivi7g03360 798 FunFam RNA recognition water-stress protein1 379 500 - -
Vivi7g03360 798 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Vivi7g03360 798 MobiDBLite consensus disorder prediction 533 682 - -
Vivi7g03360 798 CDD RRM_SF 294 361 - -
Vivi7g03360 798 Gene3D - 379 494 IPR012677 -
Vivi7g03360 798 Gene3D - 292 375 IPR012677 -
Vivi7g03360 798 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 40 798 - -
Vivi7g03360 798 MobiDBLite consensus disorder prediction 182 203 - -
Vivi7g03360 798 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 360 IPR000504 GO:0003723
Vivi7g03360 798 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 391 456 IPR000504 GO:0003723
Vivi7g03360 798 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 282 IPR000504 GO:0003723
Vivi7g03360 798 MobiDBLite consensus disorder prediction 86 102 - -
Vivi7g03360 798 SMART rrm1_1 390 465 IPR000504 GO:0003723
Vivi7g03360 798 SMART rrm1_1 293 372 IPR000504 GO:0003723
Vivi7g03360 798 SMART rrm1_1 213 286 IPR000504 GO:0003723
Vivi7g03360 798 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 389 471 IPR000504 GO:0003723
Vivi7g03360 798 SUPERFAMILY RNA-binding domain, RBD 207 290 IPR035979 GO:0003676
Vivi7g03360 798 Gene3D - 124 291 IPR012677 -
Vivi7g03360 798 MobiDBLite consensus disorder prediction 1 203 - -
Vivi7g03360 798 MobiDBLite consensus disorder prediction 103 181 - -
Vivi7g03360 798 MobiDBLite consensus disorder prediction 772 798 - -
Vivi7g03360 798 MobiDBLite consensus disorder prediction 565 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03360 Vivi-Chr7 99224972 99230093 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03360 214 459 Eukaryotic Initiation Factors Gene Family AT4G34110 23.643 8.28e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03360 - - aprc:113850151 966.837