LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi7g03345	ATGGCGACGCCGGAGTCAAACCTCGATCCAAACCCCTTCCTCCAAGAACAATCATGGCACCTCCTATCAATCCTCCTCCAGATCGGTCATCCAGTCGATGCAGAGTATTTATCTTCCCGTTGCGGTTTCTTCAATGCTTCCGCCGATTTCGTCCGTTACGTAGCATCTCTTCCCGATTCACCTCTCGCCGTTAACAGTAACGGTCTCCTTACTCCTTCCGTTAAAGCCGTTTTCGCCATCGCTAGGTTTTTCTCGTTTCAAGTCCCTAATTCAGCTCCATCATTCTCACGAAAACGCAAATCGGTTTTATCACTCACTGAAGGTGGAAGAGAACCGAAACGATTTGCAATTGGCGACAAAGTTCCAGAAATTTTCGTCAAGAGTTTTGTTGATACTTCTGCAGAGGCTATGAGAAGAAGCTTCTGTACAATGAAATTTGAGTCTCGGGTCATGCATGATGGGAATTATATGATTCCTATATGTATTGATACAGTTGGGGAATGTTCGGGTTGGTCAGAACCAAATTTTGAATACAAGGAAGCAGATAATGATACCACAACAAACACAGCCCAAGGAGTGATTTCTGACTCTCTGATCAATTCCAGTGAGTGTTTTTTCGTCAGTGATAGTGGTTTGAAGAAGCTTGAGGATTTAGATAGACTTCCGGAGCATAATGCTGCTGCGATTCTTGCTCTACCTGCTAGTGTCCAAGATCAATCACTTTGTAATGAGGGCATTATCGTTGGTACTGAGTCAGGGAAAAAAGTGGATTGCTTTGACACATTTGGGAATGAATATCCTGAAGTAAACATAACCCATTATGTGGACGATGTTGATGTTTGTAGATATAATACTGGCAAAGATCCACAAAGTGATTCTATTGAAAAAAATAAAGAATATGAAAAAGGTTTAAAGGAAGAAGTGATTTATTATGACAAAGATAGAGGAAAGGAAGATGTGGCTCAGAGTTTTAAACCTGTTTGTGGAGAAGAACCAACCAAAGTTTTGGAATTTAAAAAGGGGACACATGTAAAAGATTTAGATAAAAACAAGAGAGTGAGAAACATGGTGACCCGCTCCACCAATAAAGCCGCACATACCTCTGCAAATCCAAAGTCAGTTCCTAAAACATCTCGCATATCAAAGGGAGGACTGAAATACGATCCACGCTCAATGACTCAAATTCTAGCAGACTCACTAGCTTGTAACAAACTCGAGGATGCTCCAAAAGTAATTGATCAACGTGAAGATGATCAGAACATTGTAGCAAAAAACAAACTAAAACAAAATCGTAAAGAAAACTTGGCAGAAGATAACTCCATGGCTTCTAAGGTGGAGAAAAAAACATTTCCATCTTTTGAAACTTTTAAAATAGAGGAAGAAGAAGGTTCAGGTGGTTATGGCATTGTTTACCGTGTTCAAAGAATATTTGATGGAAAAAGACTTGCTATAAAATGCCCTCATAGTAATGCTCATAAAAATCATGTAAATAATGAGCGGAATATGCTTGAGCGTTTTGGGGGTAAAAGCTTTATTATAAAGTTTGAAGGTTCTTTCAAAAGTGGCAATAATGACTGCTTTGTCTTGGAACATGTTGAGCATGAGAGACCTGAGGTTTTGAAAAGAGAAATTGATATCAACGAGCTTCAATGGTATGCGTATTGCATGTTCAAGGCACTCGCGTGCTTGCACAAAGAGGGAGTCGTCCATAGAGATGTCAAACCTGGAAACTTCCTTTTCTCTCGAAAGCTAAAGAAAGGCTATCTTATTGACTTCAACCTTGCCATGGATTTAAAGCAGAAGTACAACTTTGGAAGTAAATCGAAACCAAGCCTTGGTGCATCCAATAATATTCCCCTCCCTTCTGGTCCTTCCCCTGTGGTCCCAGACAAGAATCTTGGAGGAATCAAGTCTCTAACATCCAATAGAAGGGAGTTGGCAGATCACAGGAAATATTCTGACATTAATAGGCATTTGAAGCCTAAGGTTAATGCTGGTCATCTGAAGAATTGTCCGGATAAGGCTGTTGCGAGTTTACGAAGAGCACAAGGAGCAGATGGCTCAGGTATAACCTCTGCCAAAGATGTTACTAGCACTAAGACAGCTTCTGCCGATAGGCTACGAGAACCCTTACCTTTCCGAGGAAGAAAGGAGCTTATCAGCCTTGTGCAGAATTCTATGCAATGTGCAACCAGTAGTTCAATGAAAAGTCCCTCTTCTCAGAGGAAAAGGGTTACCGCTCCTTCAGGCAAGGTAGATGGCAGGACACTTTATCTTACGCCGATGCCTATACATTCATCTACTGTTAATTTGGGGTTATTAAGAAGCAAAGGTGATGGAAAACATAAAAGAGAGGGTCCATGTGTTGGAACAAAGGGATTCCGTGCCCCAGAGGTTTTGTTCAGGTCTCAGTTTCAGGGACTAAAGGTTGATATTTGGTCGGCTGGAGTCACTCTACTATACCTGCTGATTGGGAAAACTTCTTTCCCTGGCGAGCCAGAACAGAGTTTAAAAGAAATTGCCAAATTGCGGGGCAGTGAAGAACTTTGGGAAGTGGCCAAGCTGCATGACCGCGAGGCATCATTTCCACTGGAGTTATTTGATGACCAATACTTGCAATCACACGACATAGAAAGCTGGTGCAAGGCTCACACAAAGAGACCAGAGTTTGTCGATCAAGTTCCGAAATCACTGTTTGATTTAATAGACAAGTGTCTAACAGTAAACCCAAGGAGTAGGATTAGTGTTGAAGAAGTTTTAAGGCATGAGTATTTTGCCCAATGCAATGACATCATGAGAAAGACAAGGATCATTCGACGTGGTCTCGGTTTAGAAACTTCAACTTCCAGAGCAGCAGTCTGA	2862	0.4151	MATPESNLDPNPFLQEQSWHLLSILLQIGHPVDAEYLSSRCGFFNASADFVRYVASLPDSPLAVNSNGLLTPSVKAVFAIARFFSFQVPNSAPSFSRKRKSVLSLTEGGREPKRFAIGDKVPEIFVKSFVDTSAEAMRRSFCTMKFESRVMHDGNYMIPICIDTVGECSGWSEPNFEYKEADNDTTTNTAQGVISDSLINSSECFFVSDSGLKKLEDLDRLPEHNAAAILALPASVQDQSLCNEGIIVGTESGKKVDCFDTFGNEYPEVNITHYVDDVDVCRYNTGKDPQSDSIEKNKEYEKGLKEEVIYYDKDRGKEDVAQSFKPVCGEEPTKVLEFKKGTHVKDLDKNKRVRNMVTRSTNKAAHTSANPKSVPKTSRISKGGLKYDPRSMTQILADSLACNKLEDAPKVIDQREDDQNIVAKNKLKQNRKENLAEDNSMASKVEKKTFPSFETFKIEEEEGSGGYGIVYRVQRIFDGKRLAIKCPHSNAHKNHVNNERNMLERFGGKSFIIKFEGSFKSGNNDCFVLEHVEHERPEVLKREIDINELQWYAYCMFKALACLHKEGVVHRDVKPGNFLFSRKLKKGYLIDFNLAMDLKQKYNFGSKSKPSLGASNNIPLPSGPSPVVPDKNLGGIKSLTSNRRELADHRKYSDINRHLKPKVNAGHLKNCPDKAVASLRRAQGADGSGITSAKDVTSTKTASADRLREPLPFRGRKELISLVQNSMQCATSSSMKSPSSQRKRVTAPSGKVDGRTLYLTPMPIHSSTVNLGLLRSKGDGKHKREGPCVGTKGFRAPEVLFRSQFQGLKVDIWSAGVTLLYLLIGKTSFPGEPEQSLKEIAKLRGSEELWEVAKLHDREASFPLELFDDQYLQSHDIESWCKAHTKRPEFVDQVPKSLFDLIDKCLTVNPRSRISVEEVLRHEYFAQCNDIMRKTRIIRRGLGLETSTSRAAV	953

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi7g03345	953	SUPERFAMILY	Protein kinase-like (PK-like)	445	930	IPR011009	-
	Vivi7g03345	953	MobiDBLite	consensus disorder prediction	358	386	-	-
	Vivi7g03345	953	Gene3D	Transferase(Phosphotransferase) domain 1	419	612	-	-
	Vivi7g03345	953	MobiDBLite	consensus disorder prediction	690	704	-	-
	Vivi7g03345	953	FunFam	Probable serine/threonine-protein kinase DDB_G0291918	448	612	-	-
	Vivi7g03345	953	ProSiteProfiles	Protein kinase domain profile.	456	925	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi7g03345	953	MobiDBLite	consensus disorder prediction	730	752	-	-
	Vivi7g03345	953	PANTHER	OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED	425	932	-	-
	Vivi7g03345	953	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	568	580	IPR008271	GO:0004672\|GO:0006468
	Vivi7g03345	953	FunFam	Kinase like protein	765	936	-	-
	Vivi7g03345	953	SMART	serkin_6	456	925	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi7g03345	953	MobiDBLite	consensus disorder prediction	358	377	-	-
	Vivi7g03345	953	MobiDBLite	consensus disorder prediction	683	708	-	-
	Vivi7g03345	953	Gene3D	Transferase(Phosphotransferase) domain 1	766	940	-	-
	Vivi7g03345	953	MobiDBLite	consensus disorder prediction	730	746	-	-
	Vivi7g03345	953	Pfam	Protein kinase domain	788	925	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi7g03345	953	Pfam	Protein kinase domain	458	603	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi7g03345	Vivi-Chr7	99007393	99014345	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi7g03345	770	930	MAP Kinase Gene Family	AT3G45640	27.059	4.66e-11	63.9

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-2	Vivi7g03345		Pkinase	1.3e-17	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi7g03345	7	99007393	99014345	Vivi7g03345	7	99007393	99014345	ECH