Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03320 ATGAATCTCGAAGTTACAACTCTTGAATCCGATCTCGCTTTTCTCGATTCAATTCAACACTACCTTCTCAACGACCACCATGACTTCAATCCTCTCGCCGCCGTTACCGCAGCGTCTCACGGTGTCGCTGCCTCTTCTCCCACCAACAGCGGTAATACTAGTAATAGTTCAACGTCAACAACTCTTCAATGTGACGCCGCCAACGCGCCTCTGGTAGAACGTGAAACTCACGCGCCTCCTTGTTGGCAGAAATATAAGGGAGTGAGGCGGAGGCCGTGGGGAAAGTTTGCAGCTGAAATTAGAGATCCGAAAAAGAACGGCGGAAGGGTGTGGCTTGGGACTTTTCAGTCGGCTGAGGATGCGGCTTTGGCTTATGATCGAGCCGCTTTTAATATGCGTGGCTCAAAGGCTAAGGTTAATTTTCCACATTTGATTGGCTCTGATGTTTCGGAGCCGATGGGAGTGACAGGTAAGCGGCGTGAGCTGGAGCCATGTTCTCCATCGCGGGTGGCTTTAGAGCCGAAAAGAAAAATTAGCCGAGTTCGTATCTATAAATAA 558 0.4964 MNLEVTTLESDLAFLDSIQHYLLNDHHDFNPLAAVTAASHGVAASSPTNSGNTSNSSTSTTLQCDAANAPLVERETHAPPCWQKYKGVRRRPWGKFAAEIRDPKKNGGRVWLGTFQSAEDAALAYDRAAFNMRGSKAKVNFPHLIGSDVSEPMGVTGKRRELEPCSPSRVALEPKRKISRVRIYK 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03320 185 Gene3D AP2/ERF domain 83 143 IPR036955 GO:0003700|GO:0006355
Vivi7g03320 185 ProSiteProfiles AP2/ERF domain profile. 84 142 IPR001471 GO:0003700|GO:0006355
Vivi7g03320 185 SMART rav1_2 84 148 IPR001471 GO:0003700|GO:0006355
Vivi7g03320 185 PRINTS Ethylene responsive element binding protein signature 124 144 IPR001471 GO:0003700|GO:0006355
Vivi7g03320 185 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Vivi7g03320 185 SUPERFAMILY DNA-binding domain 84 143 IPR016177 GO:0003677
Vivi7g03320 185 CDD AP2 83 144 IPR001471 GO:0003700|GO:0006355
Vivi7g03320 185 FunFam Ethylene-responsive transcription factor 2 83 143 - -
Vivi7g03320 185 PANTHER DNA-BINDING DOMAIN 57 158 IPR044808 GO:0003700|GO:0009873
Vivi7g03320 185 MobiDBLite consensus disorder prediction 42 61 - -
Vivi7g03320 185 Pfam AP2 domain 84 134 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03320 Vivi-Chr7 98693994 98694800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03320 76 177 AP2-EREBP Transcription Factor Family AT2G44840 63.107 8.18e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi7g03320 AP2 5.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03320 K09286 - gmx:100527194 160.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03320 7 98693994 98694800 Vivi7g03320 7 98693994 98694800 ECH
Vivi7g03320 7 98693994 98694800 Vivi6g03117 6 119971859 119972482 PCT