Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03307 ATGGGTGAGAAAGATGATGAGTTTAGCTTGGGTTTGAGCTTGAGTTTAGGGTGTGGAAAATATGATAATAATAGAAATAAAAACCAAACTCCTATGAATGTTACGCACAAACCTCTTCAATCTGTTCCAAACCATAGGGTTTCTTTCAATAACTTGTTCCATTTTCATGATCTCAGTACCGAAACGAGGTCGTTTCTGCGCGGAATCGACGGGAACTCGCTGCGAGCGTCTGCGGCGGCGGTGTTTGACGATGAGAACGGAGTTTCGTCGCCGAATAGCACTGTGTCGAGTATAAGTGGGAAGCGGAGTGAAAGAGAAGGAAATGGAGATGAAAATGATGCTGTTGAGAGGGCTTCGTGCTCTCGCGGTGGAAGTGAGGATGATGACGGTGGTGGATGCGGCGGCGATGGTGAATCTTCGAGGAAGAAGCTGAGGTTGTCGAAGGAACAGTCAGTGTTGCTGGAAGAAACTTTCAAAGAGCACAATACGCTGAATCCGAAACAAAAGCAAGCATTGGCAAAACAGTTGAATCTGAAACCCAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGAGCAAGAACCAAGTTGAAGCAAACTGAAGTGGATTGTGAGTATTTGAAGAGATGCTGTGAGACTCTAACTGAAGAGAATAGAAGGTTGCAGAAGGAGGTGCAAGAGCTTAGGGCATTGAAGTTATCTCCACAACTTTACATGCAAATGAACCCTCCCACCACTCTTACAATGTGCCCTTCGTGCGAGCGTGTCGCCGTGTCATCCGCATCCTCCTCATCAGCAGCCGCACCCTCTGCTTCAACTCCAGCTAACCGCAATCCATTAGGCCCGAGTGTTCAACGACCAGTACCTGTCAACCCTTGGGCAGCCATGTCTCTCCAAAACCGTTCCTGA 906 0.4757 MGEKDDEFSLGLSLSLGCGKYDNNRNKNQTPMNVTHKPLQSVPNHRVSFNNLFHFHDLSTETRSFLRGIDGNSLRASAAAVFDDENGVSSPNSTVSSISGKRSEREGNGDENDAVERASCSRGGSEDDDGGGCGGDGESSRKKLRLSKEQSVLLEETFKEHNTLNPKQKQALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELRALKLSPQLYMQMNPPTTLTMCPSCERVAVSSASSSSAAAPSASTPANRNPLGPSVQRPVPVNPWAAMSLQNRS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03307 301 Pfam HD-ZIP protein N terminus 1 106 IPR006712 GO:0005634
Vivi7g03307 301 ProSitePatterns 'Homeobox' domain signature. 172 195 IPR017970 GO:0000981|GO:0006355
Vivi7g03307 301 Coils Coil 203 233 - -
Vivi7g03307 301 MobiDBLite consensus disorder prediction 86 102 - -
Vivi7g03307 301 SMART halz 197 240 IPR003106 GO:0006355|GO:0043565
Vivi7g03307 301 SUPERFAMILY Homeodomain-like 127 198 IPR009057 -
Vivi7g03307 301 CDD homeodomain 141 198 IPR001356 GO:0003677
Vivi7g03307 301 MobiDBLite consensus disorder prediction 84 146 - -
Vivi7g03307 301 MobiDBLite consensus disorder prediction 103 124 - -
Vivi7g03307 301 SMART HOX_1 139 201 IPR001356 GO:0003677
Vivi7g03307 301 FunFam Homeobox-leucine zipper protein 18 125 202 - -
Vivi7g03307 301 MobiDBLite consensus disorder prediction 260 301 - -
Vivi7g03307 301 Gene3D - 145 195 - -
Vivi7g03307 301 ProSiteProfiles 'Homeobox' domain profile. 137 197 IPR001356 GO:0003677
Vivi7g03307 301 MobiDBLite consensus disorder prediction 260 279 - -
Vivi7g03307 301 Pfam Homeobox associated leucine zipper 197 231 IPR003106 GO:0006355|GO:0043565
Vivi7g03307 301 Pfam Homeodomain 141 195 IPR001356 GO:0003677
Vivi7g03307 301 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Vivi7g03307 301 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03307 Vivi-Chr7 98629470 98631875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03307 48 300 Homeobox Transcription Factor Family AT3G60390 64.286 1.86e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi7g03307 HD-ZIP_N 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03307 K09338 - gmx:100798480 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03307 7 98629470 98631875 Vivi7g03307 7 98629470 98631875 ECH