Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03293 ATGCATGGGAAGAAAGAACAAGAACATGTGAAGAAAGGTCCATGGAAAACAGAAGAAGATGATGTTTTACTTCATCATGTTAAGAAATATGGTCCAAGAGATTGGAGCTCCATTCGATCCAAAGGTCTTCTTCAAAGAACTGGAAAGTCTTGTCGTCTTCGTTGGGTTAATAAGCTTCGACCAAACCTCAAAAATGGATGCAAGTTTGCAATAGAAGAAGAGAGGATTGTGATAGAGTTGCAGGAACAATTTGGGAACAAATGGGCTAAGATTGCATCCTACTTGCCCGGAAGAACAGACAATGATGTCAAAAATTTCTGGAGCAGTAGACAGAAGAGGTTGGCTAGGCTTCTCAAAACATCATCATCAACATCAACCTCGAAGTCACACAAAAACAAAGCCAAAGTTTCTTCCCATGTTCCAACTTCAGAGATTCCTTATAAGTTCAGCTCTTCATCAGAGGGAGAAACATCATCAAAGCCTAACCCGTGTTCATTACCCTGCATTGAAAAATCTTCTGAGGTTATCAAAATGGTGCCACTAGAAGATCTTGTAAAACCCGAAAAGCCAAGTATCGACGCAAACTATGTCGAACAAGACTTAACACCTTTTGATCAGAGCTACAAAGACTTAGCCCCTTTCGATCCGAGCTACAAAAGTACTGAACACAATGCATTTCCTCAGATTCCCGAACTCCAAACTGATCTTACTTTTCCAATGTCAAGAGTTGATGAACCAAATTCGTTTGATGTTTTTGATCCCTTGTATTCATCCGAGTTTGGAATGGTTCCTTCATTTGAGCCATCAGGGAGTTGCAGATTTGGGAATATGGATACAAATGATGATTTCTCAACAAACATTGATAGTTTCTTTGATGATTTTCCTGAAGACATGTACGATCACATTGATTCACCTGCAAGTCCATCTAATCTCTGA 936 0.3964 MHGKKEQEHVKKGPWKTEEDDVLLHHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFAIEEERIVIELQEQFGNKWAKIASYLPGRTDNDVKNFWSSRQKRLARLLKTSSSTSTSKSHKNKAKVSSHVPTSEIPYKFSSSSEGETSSKPNPCSLPCIEKSSEVIKMVPLEDLVKPEKPSIDANYVEQDLTPFDQSYKDLAPFDPSYKSTEHNAFPQIPELQTDLTFPMSRVDEPNSFDVFDPLYSSEFGMVPSFEPSGSCRFGNMDTNDDFSTNIDSFFDDFPEDMYDHIDSPASPSNL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03293 311 CDD SANT 72 107 IPR001005 -
Vivi7g03293 311 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Vivi7g03293 311 PANTHER TRANSCRIPTION FACTOR DUO1 4 310 - -
Vivi7g03293 311 Gene3D - 3 65 - -
Vivi7g03293 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Vivi7g03293 311 MobiDBLite consensus disorder prediction 118 140 - -
Vivi7g03293 311 MobiDBLite consensus disorder prediction 145 164 - -
Vivi7g03293 311 FunFam MYB transcription factor 12 64 - -
Vivi7g03293 311 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vivi7g03293 311 SMART sant 65 113 IPR001005 -
Vivi7g03293 311 SMART sant 11 61 IPR001005 -
Vivi7g03293 311 Gene3D - 67 140 - -
Vivi7g03293 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 115 IPR017930 -
Vivi7g03293 311 Pfam Myb-like DNA-binding domain 12 57 IPR001005 -
Vivi7g03293 311 Pfam Myb-like DNA-binding domain 72 107 IPR001005 -
Vivi7g03293 311 CDD SANT 14 59 IPR001005 -
Vivi7g03293 311 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Vivi7g03293 311 FunFam Transcription factor GAMYB 67 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03293 Vivi-Chr7 98449420 98451145 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03293 1 308 MYB Transcription Factor Family AT3G60460 45.652 1.75e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi7g03293 Myb_DNA-binding 2.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03293 K09422 - gmx:100805384 370.548