Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03172 ATGTATGGCGGAGAGGATTATCAAAAAAGCTTGCTAGAAGTTAGAGAATCTGAAAGTAAAGCTCGCTCCCAAGCCGAAATGCTGAAAAATGCTTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCCGCCGCAGAAGCTGAAAAAGAGGAGTTAAGGGCCCAGCTTGATGAAACTGAAAGGAAAAAATCAGAGCTGGCTGAGGCTATCAAAGTTAAAGAGGCTGAGGCAGAGACCTATATCTCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGCACCAACATCTGTTGCAGCAGGTGGCTGAGAGGGACGACTATAATATCAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAGTTACATAGTGCTTTACTGTCTGAAAAGCAAGCTTTAGCAGATCAACTTAAACAGATTAATTCTTTGATAGAAAATTCAAAGAAAAAGATTGCAAGTAGTGTAGAGCAGATAGAATGTCTTCTATCAGAAGCCGCCAAATGTACTCAAGAGGAAAAACACATTGCAGCCGCTTTAGAGTTTGCCAGGAGGGAATTGGCTGATGCTGAGAAGGAGTTGAAGTTGCTCAAGTCTATTGCTTCATCCTCAGAGAAAGAATACGACCAAATTCAGAAAGATGTGGAAGCTTTTGAAAAGGAATTGGATAGTGAAAGGAGTTCACGGAAGAAGCTTGAGGAAGAACTAATGGAATTGAATAACCAAATTGCTGAGCTGAAAGCTGAAACAGAAGAGACCGCGGTACAACAACTTGAAGAAGAAATAAGAGTTTGCAAGAACATGATCAAATGTACTGTCTGTTCTGACCGTCCAAAGGAGGTTGTGATTTTGAAGTGCTACCATCTGTTCTGCAATCCATGCATACAAAGAAATCTTGAACTCCGTCACCGCAAATGTCCTGCCTGTGGAACAGCATTTGGACAGAGTGATGTACGCTTTGTTAAAATTTGA 1017 0.412 MYGGEDYQKSLLEVRESESKARSQAEMLKNALDEHGLELRVRAANEAEAACEQRLSAAEAEKEELRAQLDETERKKSELAEAIKVKEAEAETYISEIETIGQAYEDMQTQHQHLLQQVAERDDYNIKLVSESVKAKQLHSALLSEKQALADQLKQINSLIENSKKKIASSVEQIECLLSEAAKCTQEEKHIAAALEFARRELADAEKELKLLKSIASSSEKEYDQIQKDVEAFEKELDSERSSRKKLEEELMELNNQIAELKAETEETAVQQLEEEIRVCKNMIKCTVCSDRPKEVVILKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03172 338 ProSitePatterns Zinc finger RING-type signature. 301 310 IPR017907 -
Vivi7g03172 338 Gene3D - 139 283 - -
Vivi7g03172 338 SUPERFAMILY Tropomyosin 146 287 - -
Vivi7g03172 338 Coils Coil 188 283 - -
Vivi7g03172 338 SMART ring_2 286 324 IPR001841 -
Vivi7g03172 338 Coils Coil 41 89 - -
Vivi7g03172 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 338 IPR013083 -
Vivi7g03172 338 ProSiteProfiles Zinc finger RING-type profile. 286 324 IPR001841 -
Vivi7g03172 338 SUPERFAMILY RING/U-box 285 329 - -
Vivi7g03172 338 Coils Coil 146 166 - -
Vivi7g03172 338 PANTHER RING FINGER PROTEIN-RELATED 7 338 IPR013956 GO:0004842|GO:0010390
Vivi7g03172 338 Pfam Zinc finger, C3HC4 type (RING finger) 285 327 - -
Vivi7g03172 338 CDD RING-HC_Bre1-like 278 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03172 Vivi-Chr7 96664647 96674009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03172 259 333 RAD5 or RAD16-like Gene Family AT5G05130 26.190 1.27e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03172 K10696 - gmx:100796610 486.493