Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03171 ATGAAAAGAATTGAAGATATAGATCAGGTTTTACACGGAGATTTATCTGCGGAAGATGTTATCATCCAAATATCTAAGATTGACGATATGACAAAAAAGGAGGTTGACAATTTTTGTGAAGTAATTAATACTCTCCATGCAAAACACAAAGAATATACTGCTGGCATTCAGAATTATATAGACGAGTGCTTACGAGATCAATCTGACATAAAACACCTTAAAGGAGAGCTTGACGAGATCGCGGCTGAACTTGAAAAGAGTAGAAGAAAACTAGTTAGTCTGAAAATGCAAAAGGATGCAGCTATGGGAATGAATTCCTCCAGTGCAGATGCGGTGAATGGAAACGTGTCTCCTGAAAAGCCTGCTGACAGAGCCATGGGGTTGCCTGAGTTGAAGAATTTAATTGAGGAAGCCAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATGCTCGGGAAAAAAATCAAATCTTGACGAAGCAGTTCCAAGAACTTCAGAATGAACTGAATGATGATAAATATGTACGCTCTTCCCGAGTATATTCTTTAGCAAATGATCAACTTCAACATTGGATTGCGGAATTGGATCGATATAAATCATTGGTGGACTCTCTGCAGACTGGAAAGGCTAATATCGCAAAATGGGAAAAGGAGCTGAATCTTAAATTGGAGTCTTGTGATAATGCAAGGCGCATACTTGACAATTTTGACTCCAGGACTGATGAGCTCGAGCTGCAGTTGGAGAAATGTATTATTGAAAGGAATCATCTTGAAATTAAGATGGAAGAGGCAAAACAGGATACTGGGAGAAAAGATATCAAAGCCGAGTTTCGTGTGATGGCCTCGGCTTTATCTAAAGAAATGGGGATGATGGAAGCACAATTAAAGCGATGGAAGGATGCTGCTCTTGAAGCTGTATCATTGCGTGAGAAAGCACATTCACTAAGAGCAGAATTGAGTGGGAAGGCAAGCGAACTCCAGAGCCTTTCAAACAAATGTGCCAATCAGGTTTTGGAAATAAAGTCTTCAAAAGCATTGATTGAAAAGTTACAGCAGGAGAATCAGGAATTGGAATTTGTTCTCGATATGTATGGCGGAGAGGATTATCAAAAAAGCTTGCTAGAAGTTAGAGAATCTGAAAGTAAAGCTCGCTCCCAAGCCGAAATGCTGAAAAATGCTTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCCGCCGCAGAAGCTGAAAAAGAGGAGTTAAGGGCCCAGCTTGATGAAACTGAAAGGAAAAAATCAGAGCTGGCTGAGGCTATCAAAGTTAAAGAGGCTGAGGCAGAGACCTATATCTCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGCACCAACATCTGTTGCAGCAGGTGGCTGAGAGGGACGACTATAATATCAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAGTTACATAGTGCTTTACTGTCTGAAAAGCAAGCTTTAGCAGATCAACTTAAACAGATTAATTCTTTGATAGAAAATTCAAAGAAAAAGATTGCAAGTAGTGTAGAGCAGATAGAATGTCTTCTATCAGAAGCCGCCAAATGTACTCAAGAGGAAAAACACATTGCAGCCGCTTTAGAGTTTGCCAGGAGGGAATTGGCTGATGCTGAGAAGGAGTTGAAGTTGCTCAAGTCTATTGCTTCATCCTCAGAGAAAGAATACGACCAAATTCAGAAAGATGTGGAAGCTTTTGAAAAGGAATTGGATAGTGAAAGGAGTTCACGGAAGAAGCTTGAGGAAGAACTAATGGAATTGAATAACCAAATTGCTGAGCTGAAAGCTGAAACAGAAGAGACCGCGGTACAACAACTTGAAGAAGAAATAAGAGTTTGCAAGAACATGATCAAATGTACTGTCTGTTCTGACCGTCCAAAGGAGGTTGTGATTTTGAAGTGCTACCATCTGTTCTGCAATCCATGCATACAAAGAAATCTTGAACTCCGTCACCGCAAATGTCCTGCCTGTGGAACAGCATTTGGACAGAGTGATGTACGCTTTGTTAAAATTTGA 2106 0.4041 MKRIEDIDQVLHGDLSAEDVIIQISKIDDMTKKEVDNFCEVINTLHAKHKEYTAGIQNYIDECLRDQSDIKHLKGELDEIAAELEKSRRKLVSLKMQKDAAMGMNSSSADAVNGNVSPEKPADRAMGLPELKNLIEEAKIVDADRLSELQDAREKNQILTKQFQELQNELNDDKYVRSSRVYSLANDQLQHWIAELDRYKSLVDSLQTGKANIAKWEKELNLKLESCDNARRILDNFDSRTDELELQLEKCIIERNHLEIKMEEAKQDTGRKDIKAEFRVMASALSKEMGMMEAQLKRWKDAALEAVSLREKAHSLRAELSGKASELQSLSNKCANQVLEIKSSKALIEKLQQENQELEFVLDMYGGEDYQKSLLEVRESESKARSQAEMLKNALDEHGLELRVRAANEAEAACEQRLSAAEAEKEELRAQLDETERKKSELAEAIKVKEAEAETYISEIETIGQAYEDMQTQHQHLLQQVAERDDYNIKLVSESVKAKQLHSALLSEKQALADQLKQINSLIENSKKKIASSVEQIECLLSEAAKCTQEEKHIAAALEFARRELADAEKELKLLKSIASSSEKEYDQIQKDVEAFEKELDSERSSRKKLEEELMELNNQIAELKAETEETAVQQLEEEIRVCKNMIKCTVCSDRPKEVVILKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03171 701 ProSitePatterns Zinc finger RING-type signature. 664 673 IPR017907 -
Vivi7g03171 701 Coils Coil 404 452 - -
Vivi7g03171 701 Coils Coil 241 268 - -
Vivi7g03171 701 Coils Coil 149 169 - -
Vivi7g03171 701 CDD RING-HC_Bre1-like 641 697 - -
Vivi7g03171 701 PANTHER RING FINGER PROTEIN-RELATED 2 701 IPR013956 GO:0004842|GO:0010390
Vivi7g03171 701 Coils Coil 334 368 - -
Vivi7g03171 701 ProSiteProfiles Zinc finger RING-type profile. 649 687 IPR001841 -
Vivi7g03171 701 Coils Coil 551 646 - -
Vivi7g03171 701 MobiDBLite consensus disorder prediction 103 124 - -
Vivi7g03171 701 Coils Coil 509 529 - -
Vivi7g03171 701 Coils Coil 70 97 - -
Vivi7g03171 701 SUPERFAMILY RING/U-box 648 692 - -
Vivi7g03171 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 700 IPR013083 -
Vivi7g03171 701 SMART ring_2 649 687 IPR001841 -
Vivi7g03171 701 Pfam Zinc finger, C3HC4 type (RING finger) 648 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03171 Vivi-Chr7 96647165 96674009 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03171 622 696 RAD5 or RAD16-like Gene Family AT5G05130 26.190 1.48e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03171 K10696 - gmx:100796610 1026.54