Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03170 ATGGCTCTTCTCGGGATACAAGCAGGGAGAGACAAAGATTCTTTGCAAACTTTAGATTACCTTGATAATCCTCAAGGTTCACTTCCTCCGTGTCCTCCAAATGATATATTTCTATGTAAATTAATCCAGAAAGATTCTATTGAAGGAAGCAGTAATGATGAGATAACTAGTTTTGTCGAGAAAGCCCTTGCTCTGCGTCAGTCATCTACTAGGGAGTTGTTGGAACTCATTAATGGTACTGTTGATGATCAGATGAAAAGAATTGAAGATATAGATCAGGTTTTACACGGAGATTTATCTGCGGAAGATGTTATCATCCAAATATCTAAGATTGACGATATGACAAAAAAGGAGGTTGACAATTTTTGTGAAGTAATTAATACTCTCCATGCAAAACACAAAGAATATACTGCTGGCATTCAGAATTATATAGACGAGTGCTTACGAGATCAATCTGACATAAAACACCTTAAAGGAGAGCTTGACGAGATCGCGGCTGAACTTGAAAAGAGTAGAAGAAAACTAGTTAGTCTGAAAATGCAAAAGGATGCAGCTATGGGAATGAATTCCTCCAGTGCAGATGCGGTGAATGGAAACGTGTCTCCTGAAAAGCCTGCTGACAGAGCCATGGGGTTGCCTGAGTTGAAGAATTTAATTGAGGAAGCCAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATGCTCGGGAAAAAAATCAAATCTTGACGAAGCAGTTCCAAGAACTTCAGAATGAACTGAATGATGATAAATATGTACGCTCTTCCCGAGTATATTCTTTAGCAAATGATCAACTTCAACATTGGATTGCGGAATTGGATCGATATAAATCATTGGTGGACTCTCTGCAGACTGGAAAGGCTAATATCGCAAAATGGGAAAAGGAGCTGAATCTTAAATTGGAGTCTTGTGATAATGCAAGGCGCATACTTGACAATTTTGACTCCAGGACTGATGAGCTCGAGCTGCAGTTGGAGAAATGTATTATTGAAAGGAATCATCTTGAAATTAAGATGGAAGAGGCAAAACAGGATACTGGGAGAAAAGATATCAAAGCCGAGTTTCGTGTGATGGCCTCGGCTTTATCTAAAGAAATGGGGATGATGGAAGCACAATTAAAGCGATGGAAGGATGCTGCTCTTGAAGCTGTATCATTGCGTGAGAAAGCACATTCACTAAGAGCAGAATTGAGTGGGAAGGCAAGCGAACTCCAGAGCCTTTCAAACAAATGTGCCAATCAGGTTTTGGAAATAAAGTCTTCAAAAGCATTGATTGAAAAGTTACAGCAGGAGAATCAGGAATTGGAATTTGTTCTCGATATGTATGGCGGAGAGGATTATCAAAAAAGCTTGCTAGAAGTTAGAGAATCTGAAAGTAAAGCTCGCTCCCAAGCCGAAATGCTGAAAAATGCTTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCCGCCGCAGAAGCTGAAAAAGAGGAGTTAAGGGCCCAGCTTGATGAAACTGAAAGGAAAAAATCAGAGCTGGCTGAGGCTATCAAAGTTAAAGAGGCTGAGGCAGAGACCTATATCTCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGCACCAACATCTGTTGCAGCAGGTGGCTGAGAGGGACGACTATAATATCAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAGTTACATAGTGCTTTACTGTCTGAAAAGCAAGCTTTAGCAGATCAACTTAAACAGATTAATTCTTTGATAGAAAATTCAAAGAAAAAGATTGCAAGTAGTGTAGAGCAGATAGAATGTCTTCTATCAGAAGCCGCCAAATGTACTCAAGAGGAAAAACACATTGCAGCCGCTTTAGAGTTTGCCAGGAGGGAATTGGCTGATGCTGAGAAGGAGTTGAAGTTGCTCAAGTCTATTGCTTCATCCTCAGAGAAAGAATACGACCAAATTCAGAAAGATGTGGAAGCTTTTGAAAAGGAATTGGATAGTGAAAGGAGTTCACGGAAGAAGCTTGAGGAAGAACTAATGGAATTGAATAACCAAATTGCTGAGCTGAAAGCTGAAACAGAAGAGACCGCGGTACAACAACTTGAAGAAGAAATAAGAGTTTGCAAGAACATGATCAAATGTACTGTCTGTTCTGACCGTCCAAAGGAGGTTGTGATTTTGAAGTGCTACCATCTGTTCTGCAATCCATGCATACAAAGAAATCTTGAACTCCGTCACCGCAAATGTCCTGCCTGTGGAACAGCATTTGGACAGAGTGATGTACGCTTTGTTAAAATTTGA 2358 0.4029 MALLGIQAGRDKDSLQTLDYLDNPQGSLPPCPPNDIFLCKLIQKDSIEGSSNDEITSFVEKALALRQSSTRELLELINGTVDDQMKRIEDIDQVLHGDLSAEDVIIQISKIDDMTKKEVDNFCEVINTLHAKHKEYTAGIQNYIDECLRDQSDIKHLKGELDEIAAELEKSRRKLVSLKMQKDAAMGMNSSSADAVNGNVSPEKPADRAMGLPELKNLIEEAKIVDADRLSELQDAREKNQILTKQFQELQNELNDDKYVRSSRVYSLANDQLQHWIAELDRYKSLVDSLQTGKANIAKWEKELNLKLESCDNARRILDNFDSRTDELELQLEKCIIERNHLEIKMEEAKQDTGRKDIKAEFRVMASALSKEMGMMEAQLKRWKDAALEAVSLREKAHSLRAELSGKASELQSLSNKCANQVLEIKSSKALIEKLQQENQELEFVLDMYGGEDYQKSLLEVRESESKARSQAEMLKNALDEHGLELRVRAANEAEAACEQRLSAAEAEKEELRAQLDETERKKSELAEAIKVKEAEAETYISEIETIGQAYEDMQTQHQHLLQQVAERDDYNIKLVSESVKAKQLHSALLSEKQALADQLKQINSLIENSKKKIASSVEQIECLLSEAAKCTQEEKHIAAALEFARRELADAEKELKLLKSIASSSEKEYDQIQKDVEAFEKELDSERSSRKKLEEELMELNNQIAELKAETEETAVQQLEEEIRVCKNMIKCTVCSDRPKEVVILKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03170 785 Coils Coil 418 452 - -
Vivi7g03170 785 Coils Coil 325 352 - -
Vivi7g03170 785 Coils Coil 488 536 - -
Vivi7g03170 785 Coils Coil 635 730 - -
Vivi7g03170 785 CDD RING-HC_Bre1-like 725 781 - -
Vivi7g03170 785 SUPERFAMILY RING/U-box 732 776 - -
Vivi7g03170 785 Pfam Zinc finger, C3HC4 type (RING finger) 732 774 - -
Vivi7g03170 785 Coils Coil 593 613 - -
Vivi7g03170 785 ProSitePatterns Zinc finger RING-type signature. 748 757 IPR017907 -
Vivi7g03170 785 SMART ring_2 733 771 IPR001841 -
Vivi7g03170 785 Coils Coil 154 181 - -
Vivi7g03170 785 PANTHER RING FINGER PROTEIN-RELATED 20 785 IPR013956 GO:0004842|GO:0010390
Vivi7g03170 785 ProSiteProfiles Zinc finger RING-type profile. 733 771 IPR001841 -
Vivi7g03170 785 MobiDBLite consensus disorder prediction 187 208 - -
Vivi7g03170 785 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 713 784 IPR013083 -
Vivi7g03170 785 Coils Coil 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03170 Vivi-Chr7 96647165 96674009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03170 706 780 RAD5 or RAD16-like Gene Family AT5G05130 26.190 2.47e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03170 K10696 - gmx:100796610 1126.31