Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03169 ATGGAAAATTCAGACCAAGACGAACCTGACAAGAAGAGGCCTCATCTTCTCTCCCCTGTTTCTTCCCGCATCTTCAGAAACTCTTCCAACCATTCTCCTAACAGTAAAAATGCAGATGCAGAAGCCTTACAGCTCCAAAATCAGAAGCTTGTTCAACAAACAGAAATCCAGAAACAGGCTTTACAGGATCTTGAAGAAAAAACGAAAGAACTAAAAGAAAGACAAAATTCTTATGATGACTTATTAATTGCATTCAACCAAAACTGGGAACAGTTGGTTGCTGATATGGCTCTTCTCGGGATACAAGCAGGGAGAGACAAAGATTCTTTGCAAACTTTAGATTACCTTGATAATCCTCAAGGTTCACTTCCTCCGTGTCCTCCAAATGATATATTTCTATGTAAATTAATCCAGAAAGATTCTATTGAAGGAAGCAGTAATGATGAGATAACTAGTTTTGTCGAGAAAGCCCTTGCTCTGCGTCAGTCATCTACTAGGGAGTTGTTGGAACTCATTAATGGTACTGTTGATGATCAGATGAAAAGAATTGAAGATATAGATCAGGTTTTACACGGAGATTTATCTGCGGAAGATGTTATCATCCAAATATCTAAGATTGACGATATGACAAAAAAGGAGGTTGACAATTTTTGTGAAGTAATTAATACTCTCCATGCAAAACACAAAGAATATACTGCTGGCATTCAGAATTATATAGACGAGTGCTTACGAGATCAATCTGACATAAAACACCTTAAAGGAGAGCTTGACGAGATCGCGGCTGAACTTGAAAAGAGTAGAAGAAAACTAGTTAGTCTGAAAATGCAAAAGGATGCAGCTATGGGAATGAATTCCTCCAGTGCAGATGCGGTGAATGGAAACGTGTCTCCTGAAAAGCCTGCTGACAGAGCCATGGGGTTGCCTGAGTTGAAGAATTTAATTGAGGAAGCCAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATGCTCGGGAAAAAAATCAAATCTTGACGAAGCAGTTCCAAGAACTTCAGAATGAACTGAATGATGATAAATATGTACGCTCTTCCCGAGTATATTCTTTAGCAAATGATCAACTTCAACATTGGATTGCGGAATTGGATCGATATAAATCATTGGTGGACTCTCTGCAGACTGGAAAGGCTAATATCGCAAAATGGGAAAAGGAGCTGAATCTTAAATTGGAGTCTTGTGATAATGCAAGGCGCATACTTGACAATTTTGACTCCAGGACTGATGAGCTCGAGCTGCAGTTGGAGAAATGTATTATTGAAAGGAATCATCTTGAAATTAAGATGGAAGAGGCAAAACAGGATACTGGGAGAAAAGATATCAAAGCCGAGTTTCGTGTGATGGCCTCGGCTTTATCTAAAGAAATGGGGATGATGGAAGCACAATTAAAGCGATGGAAGGATGCTGCTCTTGAAGCTGTATCATTGCGTGAGAAAGCACATTCACTAAGAGCAGAATTGAGTGGGAAGGCAAGCGAACTCCAGAGCCTTTCAAACAAATGTGCCAATCAGGTTTTGGAAATAAAGTCTTCAAAAGCATTGATTGAAAAGTTACAGCAGGAGAATCAGGAATTGGAATTTGTTCTCGATATGTATGGCGGAGAGGATTATCAAAAAAGCTTGCTAGAAGTTAGAGAATCTGAAAGTAAAGCTCGCTCCCAAGCCGAAATGCTGAAAAATGCTTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCCGCCGCAGAAGCTGAAAAAGAGGAGTTAAGGGCCCAGCTTGATGAAACTGAAAGGAAAAAATCAGAGCTGGCTGAGGCTATCAAAGTTAAAGAGGCTGAGGCAGAGACCTATATCTCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGCACCAACATCTGTTGCAGCAGGTGGCTGAGAGGGACGACTATAATATCAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAGTTACATAGTGCTTTACTGTCTGAAAAGCAAGCTTTAGCAGATCAACTTAAACAGATTAATTCTTTGATAGAAAATTCAAAGAAAAAGATTGCAAGTAGTGTAGAGCAGATAGAATGTCTTCTATCAGAAGCCGCCAAATGTACTCAAGAGGAAAAACACATTGCAGCCGCTTTAGAGTTTGCCAGGAGGGAATTGGCTGATGCTGAGAAGGAGTTGAAGTTGCTCAAGTCTATTGCTTCATCCTCAGAGAAAGAATACGACCAAATTCAGAAAGATGTGGAAGCTTTTGAAAAGGAATTGGATAGTGAAAGGAGTTCACGGAAGAAGCTTGAGGAAGAACTAATGGAATTGAATAACCAAATTGCTGAGCTGAAAGCTGAAACAGAAGAGACCGCGGTACAACAACTTGAAGAAGAAATAAGAGTTTGCAAGAACATGATCAAATGTACTGTCTGTTCTGACCGTCCAAAGGAGGTTGTGATTTTGAAGTGCTACCATCTGTTCTGCAATCCATGCATACAAAGAAATCTTGAACTCCGTCACCGCAAATGTCCTGCCTGTGGAACAGCATTTGGACAGAGTGATGTACGCTTTGTTAAAATTTGA 2643 0.4014 MENSDQDEPDKKRPHLLSPVSSRIFRNSSNHSPNSKNADAEALQLQNQKLVQQTEIQKQALQDLEEKTKELKERQNSYDDLLIAFNQNWEQLVADMALLGIQAGRDKDSLQTLDYLDNPQGSLPPCPPNDIFLCKLIQKDSIEGSSNDEITSFVEKALALRQSSTRELLELINGTVDDQMKRIEDIDQVLHGDLSAEDVIIQISKIDDMTKKEVDNFCEVINTLHAKHKEYTAGIQNYIDECLRDQSDIKHLKGELDEIAAELEKSRRKLVSLKMQKDAAMGMNSSSADAVNGNVSPEKPADRAMGLPELKNLIEEAKIVDADRLSELQDAREKNQILTKQFQELQNELNDDKYVRSSRVYSLANDQLQHWIAELDRYKSLVDSLQTGKANIAKWEKELNLKLESCDNARRILDNFDSRTDELELQLEKCIIERNHLEIKMEEAKQDTGRKDIKAEFRVMASALSKEMGMMEAQLKRWKDAALEAVSLREKAHSLRAELSGKASELQSLSNKCANQVLEIKSSKALIEKLQQENQELEFVLDMYGGEDYQKSLLEVRESESKARSQAEMLKNALDEHGLELRVRAANEAEAACEQRLSAAEAEKEELRAQLDETERKKSELAEAIKVKEAEAETYISEIETIGQAYEDMQTQHQHLLQQVAERDDYNIKLVSESVKAKQLHSALLSEKQALADQLKQINSLIENSKKKIASSVEQIECLLSEAAKCTQEEKHIAAALEFARRELADAEKELKLLKSIASSSEKEYDQIQKDVEAFEKELDSERSSRKKLEEELMELNNQIAELKAETEETAVQQLEEEIRVCKNMIKCTVCSDRPKEVVILKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03169 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 879 IPR013083 -
Vivi7g03169 880 MobiDBLite consensus disorder prediction 282 303 - -
Vivi7g03169 880 Coils Coil 688 708 - -
Vivi7g03169 880 MobiDBLite consensus disorder prediction 1 17 - -
Vivi7g03169 880 MobiDBLite consensus disorder prediction 21 40 - -
Vivi7g03169 880 Coils Coil 249 276 - -
Vivi7g03169 880 Coils Coil 513 547 - -
Vivi7g03169 880 PANTHER RING FINGER PROTEIN-RELATED 7 880 IPR013956 GO:0004842|GO:0010390
Vivi7g03169 880 Coils Coil 730 825 - -
Vivi7g03169 880 SUPERFAMILY RING/U-box 827 871 - -
Vivi7g03169 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Vivi7g03169 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Vivi7g03169 880 Coils Coil 420 447 - -
Vivi7g03169 880 Coils Coil 583 631 - -
Vivi7g03169 880 Coils Coil 328 348 - -
Vivi7g03169 880 Coils Coil 47 84 - -
Vivi7g03169 880 CDD RING-HC_Bre1-like 820 876 - -
Vivi7g03169 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 869 - -
Vivi7g03169 880 SMART ring_2 828 866 IPR001841 -
Vivi7g03169 880 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03169 Vivi-Chr7 96647064 96674009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03169 801 875 RAD5 or RAD16-like Gene Family AT5G05130 26.190 2.53e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03169 K10696 - gmx:100796610 1245.72