Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03166 ATGCCAGAAAATCGGCAGGTTTTCAAGAATGCTGGTTCTAATCCATCTGGTGATAACATTGAAGAAGCGATTCGGCGATTGAAAATCAGTAGTAATCGGGACAGAGATGCTGCGGCTCAATCGATGCCTTATCCGGATCGACCTGGTGAACCTGACTGCTTATATTATTTAAGGACTGGAATGTGTGGTTACGGGAGTAACTGCCGCTATAACCACCCTGCTAACGTTTCACTTGTTACTCAATATGGTGAAGAACTTCCTGAGAGAGTAGGGCAGCCTGATTGTGAGTATTTTCTTAAGACAGGAACATGCAAGTATGGATCGACATGTAAATATCATCATCCAAAGGACAGGCGCGGTGCTGCGCCCGTAGTATTCAATACTTTAGGTCTTCCAATGCGTCAGGAAGAAAAATCGTGTCCCTATTACATGAGAACCGGGTCTTGTAAGTTTGGAGTTGCGTGTAAGTTTCATCATCCACAGCAGGCGGCGGCTTCCTTTGGAGCTTACCCGGCGGCTGCTTCCCCTCCTCCCACAGCTGTTACTTCATCAGGTTTTCCATATGCTGGCGGCTTTCCTGCATGGTCGGTTCCAAGAATGTCGTATTTATCTGGACAGGGCATTCAATCTTATGTGCCTCCTTTTATGCCTTCTACACAAAGCATTATGCCTGCGCTGAACTGGAGCAACTACATGGGAAGTATTAGCCCCGCAATGCCTACCGGTTATCTTGGATCTAATCTTGTCTATGACTATATGAATCCGGCGGGAGACACACTTTCTGGCGGACAGGGAGTCAATTCATTTCTTCCGGATAGACCCGATCAACCAGAATGTAAATACTTTATGAGCACCGGAACATGCAAGTATGGATCTGATTGCAAGTTCCACCACCCCAAAGAAAGATTAGGCCAGTCATTGTCCATTAATCCACTTGGCCTTCCCATGAGACCTGGGAATGCTATATGCTCTTATTACAGAATCTATGGAGTATGCAAGTTTGGTCCAACATGCAAATTTGATCATCCAGTCGTCGCCATCCCTCAGAACTACGCCTTACCCTCGCCTACTCTATCGGTATTCGACACATCTCTAGTTAATACTCCAAGAAGGATATCGCCCGTCCAACAAGCCGAGACATCTCCGTCAAAACAATCAACTGACAAGCTTCAACAATCCGACACAAAAGCTGCCCCCGAAGAAGACTCATCTAAACAAGCTGACAACACTACATCAAATTCTCGCACACCTCCTTCCGAGTCCGAGTCTTTACACGAATAA 1281 0.4621 MPENRQVFKNAGSNPSGDNIEEAIRRLKISSNRDRDAAAQSMPYPDRPGEPDCLYYLRTGMCGYGSNCRYNHPANVSLVTQYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVVFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQQAAASFGAYPAAASPPPTAVTSSGFPYAGGFPAWSVPRMSYLSGQGIQSYVPPFMPSTQSIMPALNWSNYMGSISPAMPTGYLGSNLVYDYMNPAGDTLSGGQGVNSFLPDRPDQPECKYFMSTGTCKYGSDCKFHHPKERLGQSLSINPLGLPMRPGNAICSYYRIYGVCKFGPTCKFDHPVVAIPQNYALPSPTLSVFDTSLVNTPRRISPVQQAETSPSKQSTDKLQQSDTKAAPEEDSSKQADNTTSNSRTPPSESESLHE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03166 426 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Vivi7g03166 426 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Vivi7g03166 426 SMART c3hfinal6 317 344 IPR000571 GO:0046872
Vivi7g03166 426 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Vivi7g03166 426 SMART c3hfinal6 273 300 IPR000571 GO:0046872
Vivi7g03166 426 MobiDBLite consensus disorder prediction 373 393 - -
Vivi7g03166 426 SUPERFAMILY CCCH zinc finger 277 303 IPR036855 GO:0046872
Vivi7g03166 426 Gene3D - 120 167 - -
Vivi7g03166 426 MobiDBLite consensus disorder prediction 1 20 - -
Vivi7g03166 426 ProSiteProfiles Zinc finger C3H1-type profile. 317 345 IPR000571 GO:0046872
Vivi7g03166 426 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Vivi7g03166 426 Gene3D - 45 119 - -
Vivi7g03166 426 Gene3D - 270 352 - -
Vivi7g03166 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Vivi7g03166 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Vivi7g03166 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 300 IPR000571 GO:0046872
Vivi7g03166 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Vivi7g03166 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 343 IPR000571 GO:0046872
Vivi7g03166 426 ProSiteProfiles Zinc finger C3H1-type profile. 273 301 IPR000571 GO:0046872
Vivi7g03166 426 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Vivi7g03166 426 PANTHER PROTEIN PHOSPHATASE RELATED 33 381 - -
Vivi7g03166 426 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Vivi7g03166 426 MobiDBLite consensus disorder prediction 373 426 - -
Vivi7g03166 426 SUPERFAMILY CCCH zinc finger 318 344 IPR036855 GO:0046872
Vivi7g03166 426 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Vivi7g03166 426 MobiDBLite consensus disorder prediction 404 419 - -
Vivi7g03166 426 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Vivi7g03166 426 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03166 Vivi-Chr7 96521451 96525060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03166 1 409 C3H Transcription Factor Family AT1G04990 44.181 5.98e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi7g03166 zf-CCCH 9.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03166 - - vvo:131616025 878.241