Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03130 ATGTTAGGGTTTGGAGGAAACAGTTGCAGTGAGATTTCTTCTATGGATCATCATCATCATATGATGAACAATATGGAAACTAGTAATAGGAAGTTTCTTTCTTTTCCTTTCAACAATAACAACTCTTCTGGTGTTCAAGATCATCAGCATCATAACTTTACTCACCAGAACAGCAACAATAACACTTCTACAAGTGTTGTTGTTAGGGATAAAATCATGGCTCATCCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTCAATTGCTTGAAGGTTGGAGCACCACCTGAAGTGGTGGCTAGCTTAGAAGAATCATGTGCTAAATGTGAAATGTTGAATGGCTCTTCAGGAAGGACAGGAAGTAGTTCTTGTATAGGTGAAGATCCAGGTTTGGATCAGTTCATGGAGGCATATTGTGAGATGCTTATCAAGTATGAGCAAGAACTCACTAAACCTTTCAAGGAAGCTATGCTTTTCCTTTCAAGAATTGAGTCTCAGCTTAAGGCTCTTGCTGTTTCAACTGATTTTGGCCAAAGTGAACCACCTTCTATGAATGAGATTGATGTTCATGAAAACAACTTCGATACTCAAGGCGAAGATCAAGAATTAAAAGTGCAGCTGTTGCGCAAGTATAGTGGATATCTTGGCAGCCTCAAGAAGGAGTTCTTGAAGAAGAAAAAGAATGGAAAGTTACCAAAGGAAGCTCGTCAACAACTACTCGATTGGTGGAACCGTCATTACAAATGGCCATATCCATCGGAATCTCAAAAACAAGCACTTGCAGAATCGACAGGGCTAGATTTGAAACAGATCAACAACTGGTTCATCAATCAGAGAAAACGTCACTGGAAACCTTCTGAGGATATGCAATTTGCTGTGATGGATGCCACAAACTACTACATGGAAAATGTAATGTGCAAACCATTTCCCATGGATGCCATGCCTATGCTTCTTTAG 954 0.4004 MLGFGGNSCSEISSMDHHHHMMNNMETSNRKFLSFPFNNNNSSGVQDHQHHNFTHQNSNNNTSTSVVVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCEMLNGSSGRTGSSSCIGEDPGLDQFMEAYCEMLIKYEQELTKPFKEAMLFLSRIESQLKALAVSTDFGQSEPPSMNEIDVHENNFDTQGEDQELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDAMPMLL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03130 317 SMART KNOX1_2 66 110 IPR005540 GO:0003677|GO:0005634
Vivi7g03130 317 ProSiteProfiles ELK domain profile. 201 221 IPR005539 GO:0003677
Vivi7g03130 317 SMART ELK_2 201 222 IPR005539 GO:0003677
Vivi7g03130 317 Pfam ELK domain 201 222 IPR005539 GO:0003677
Vivi7g03130 317 SMART KNOX2_2 120 171 IPR005541 GO:0003677|GO:0005634
Vivi7g03130 317 Pfam Homeobox KN domain 241 280 IPR008422 GO:0003677|GO:0006355
Vivi7g03130 317 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 105 291 - -
Vivi7g03130 317 SUPERFAMILY Homeodomain-like 223 295 IPR009057 -
Vivi7g03130 317 CDD homeodomain 233 285 IPR001356 GO:0003677
Vivi7g03130 317 Gene3D - 219 292 - -
Vivi7g03130 317 ProSitePatterns 'Homeobox' domain signature. 259 282 IPR017970 GO:0000981|GO:0006355
Vivi7g03130 317 Pfam KNOX1 domain 68 109 IPR005540 GO:0003677|GO:0005634
Vivi7g03130 317 ProSiteProfiles 'Homeobox' domain profile. 221 284 IPR001356 GO:0003677
Vivi7g03130 317 SMART HOX_1 223 288 IPR001356 GO:0003677
Vivi7g03130 317 Pfam KNOX2 domain 123 169 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03130 Vivi-Chr7 96003894 96006480 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03130 68 311 Homeobox Transcription Factor Family AT1G62360 67.054 1.29e-108 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vivi7g03130 KNOX2 8.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03130 - - mtr:11431352 508.064