LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi7g03083	ATGTCAGACGACATGCTGGTTCATTTTGCGTCGAATTCTTCTAACCAATCGGATCAGTCTCTGCCTACAAAGATGGCTAAGTTGGAAGCTCGAATGGCGGGAAAAGCTTCCTCCGCTGTTTCTCAACAACCAGGTTGGCCTTCTGTATCTTCTTCAGCTGGGAAATTCGGTGGTCCAGCTGAGGAAATAGTGAAGCCTTCTCCTTCTTCAAGTGATTCTGATGATGACTCTCTGCCTACAAAGATAGCTAAGTTGGAAGCTCGAATGGTGGGAAAAGCTTCCTCCGCTGCTTCTCAGCAACCTGGTAGGCCTTCTGTTTCTTCTTCAGCTGGGAAATTTGGTGGTCCAGCTGAGGAAATAGTGGAGCCTTCTTCTACTTCAAGTGATTCTGATGATGACAATGGTGGGGAATTCTTGATTCAAGCCAACACACGGAAGCGGCTTAAAGTTCAAGAAGATGTTAACGAGGCTCTTACTGATGGAAGACAAACTAGTTTGGAGGCTGTGGAGACAAAAAATAATATTGATGCAAATAGAAAGAAATCTGGCCGTGGAAGAGGGGGTTCTGGTTCAGGTAGAGGCCGTGGTTCCAAATCTAACGATCATACCAGAACACAAAATTCTCATCCGACTTCAGATGCATCCCATAAAGATGGTAGACTCAAAGATCAGTTTCATAGTGATAATAGTGCTTCATTGAAGGAGGAGATTGTATCTTTACGTGCTAAAGTTGCTGTGTTGGAGGAAGACTTGCTTAAGGCGAAGCAAGAAATCTCTGAGCATAAGAACCTTTGTCCACAGATAGAAAAGGAACTGCGGGAACTCAAGGATCTTGAACAGCAAATGAAGCCTAAGAGAACAAAAATAATATCTGATTTGTTGATATCAGTTTCAAAAGCTGAGAGACAAGAAGCAAGGCTAAAAGTACGACAAGACTCATTGAGACTTGGAAATGTTGGTGTATCCAGAGCTGGAACTGTCTTAACTGAGAGCTGGGAAGATGGCCAGGAGTTAAAGGATATAGTTGCTCAGCTTAAACAACTAACGGACAAAAGGGAGGCAATTATGCGGCAGCGCAAGTTATTTAAAGAAAAACAATCTGATAAGGGTGATGGAATAAATGCAGAGGCTGGATTACTGGAAGATGTTCTCATTCAGGATGAAATATATAAGGCTCGACTAGCCAACATTAAACGAGAAGAAGAATCTATCTTGCGAGAGAAGGAACGCTACGACCTAGATAAGGGAAGGCTAATTCGTGAAATGAAACGCATACGGGATGAAGATGGTTCACGGTTCAACAGCTTTCAAATTCTACACCATCGCTATGCCCTTTTAAACCTTCTTGGAAAGGGAGGATTCAGCGAGGTGTACAAGGCTTTTGACTTGGTGGATCATAGATATGTTGCTTGCAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATCAGGCATGCAATTCGAGAGTATAATATTCACAAGACCTTGGTTCATCCTCACATTGTTCGCTTATGGGACATCTTTGAGATTGATCATAATACATTTTGCACTGTTCTAGAGTATTGTAGTGGGAAAGATCTCGACGCTGTTCTTAAAACAACATCTACATTGCCCGAGAAGGAAGCTAGGGTCATTTTAGTTCAGATTTTCCAGGGCCTTATATACATGAATAAAAGAACACTGAAAATTATCCATTATGATTTAAAGCCTGGAAATGTTTTGTTTGATGAGCTTGGTAGTGCCAAAGTGACTGACTTTGGTCTTAGCAAGATTATGGAGAATGATGTGGGATCCCAGGGTATGGAACTTACATCCCAGGGGGCTGGGACATATTGGTATTTACCTCCTGAATGCTTCGAGCTCAATAAGACACCTCTTATATCATCCAAGGTTGATGTATGGTCTGCTGGTGTTTTGTTTTATCAAATGCTCTTTGGTAGACGTCCTTTTGGACATGACCAATCACAGGAGAAAATACTTCGTGAAGACACAATTATTAATGCACGCAAGGTTGAATTTCCCTCTAAACCTACTGTTTCTAGTGAGGCAAAGGAATTCATTCGGCGATGTCTTACATATAATCAGAATGATAGACCAGATGTATTAACTCTTGCTCAGGATCCATATCTCACTTACTCAAAGAAACAGTGA	2169	0.4168	MSDDMLVHFASNSSNQSDQSLPTKMAKLEARMAGKASSAVSQQPGWPSVSSSAGKFGGPAEEIVKPSPSSSDSDDDSLPTKIAKLEARMVGKASSAASQQPGRPSVSSSAGKFGGPAEEIVEPSSTSSDSDDDNGGEFLIQANTRKRLKVQEDVNEALTDGRQTSLEAVETKNNIDANRKKSGRGRGGSGSGRGRGSKSNDHTRTQNSHPTSDASHKDGRLKDQFHSDNSASLKEEIVSLRAKVAVLEEDLLKAKQEISEHKNLCPQIEKELRELKDLEQQMKPKRTKIISDLLISVSKAERQEARLKVRQDSLRLGNVGVSRAGTVLTESWEDGQELKDIVAQLKQLTDKREAIMRQRKLFKEKQSDKGDGINAEAGLLEDVLIQDEIYKARLANIKREEESILREKERYDLDKGRLIREMKRIRDEDGSRFNSFQILHHRYALLNLLGKGGFSEVYKAFDLVDHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHPHIVRLWDIFEIDHNTFCTVLEYCSGKDLDAVLKTTSTLPEKEARVILVQIFQGLIYMNKRTLKIIHYDLKPGNVLFDELGSAKVTDFGLSKIMENDVGSQGMELTSQGAGTYWYLPPECFELNKTPLISSKVDVWSAGVLFYQMLFGRRPFGHDQSQEKILREDTIINARKVEFPSKPTVSSEAKEFIRRCLTYNQNDRPDVLTLAQDPYLTYSKKQ	722

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi7g03083	722	Gene3D	Transferase(Phosphotransferase) domain 1	434	722	-	-
	Vivi7g03083	722	SUPERFAMILY	Protein kinase-like (PK-like)	435	717	IPR011009	-
	Vivi7g03083	722	PANTHER	MIXED LINEAGE PROTEIN KINASE	12	721	-	-
	Vivi7g03083	722	SMART	serkin_6	443	716	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi7g03083	722	Coils	Coil	230	288	-	-
	Vivi7g03083	722	MobiDBLite	consensus disorder prediction	1	23	-	-
	Vivi7g03083	722	MobiDBLite	consensus disorder prediction	157	172	-	-
	Vivi7g03083	722	FunFam	Serine/threonine-protein kinase TOUSLED	434	721	-	-
	Vivi7g03083	722	CDD	STKc_TLK	442	715	-	-
	Vivi7g03083	722	ProSiteProfiles	Protein kinase domain profile.	443	716	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi7g03083	722	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	569	581	IPR008271	GO:0004672\|GO:0006468
	Vivi7g03083	722	MobiDBLite	consensus disorder prediction	93	107	-	-
	Vivi7g03083	722	MobiDBLite	consensus disorder prediction	211	228	-	-
	Vivi7g03083	722	Coils	Coil	338	365	-	-
	Vivi7g03083	722	ProSitePatterns	Protein kinases ATP-binding region signature.	449	472	IPR017441	GO:0005524
	Vivi7g03083	722	MobiDBLite	consensus disorder prediction	1	228	-	-
	Vivi7g03083	722	Pfam	Protein kinase domain	444	716	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi7g03083	722	MobiDBLite	consensus disorder prediction	36	50	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi7g03083	Vivi-Chr7	95567556	95579541	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi7g03083	448	722	MAP Kinase Kinase Kinase	AT1G09000	29.710	2.04e-27	115

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TLK	Vivi7g03083		Pkinase	2e-61	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi7g03083	K08864		-	gmx:100805168	1013.45