Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03020 ATGGCCAAAAAACGAAAGCTTCGATCTTCCGACCCCGAACCCACCAAGCCACTCGAAACCGAAATTAAACAAGAAGTACCCGAACCACAACCCGAAACAACAGCAGACCAAGAACCAACCCATGAAAACATGGCCGTCGATGAACTAATCACACCGAAACAAGAAGTGGAAGCAGACCCAGAAGAAGAAGAAGAACAAGAACCAGAGCAATTAGCAGAAGAAGAAGAAGAGGAAGAGGAACAAGGAGAAGACGAAACCCTAGGAAATCAAAACCAGCAACAAGACGCCGCGGAAGTTTCAAATCCAGCCGCCGCTTCGACCGTTTCGACCGAAGCTAACGGTGCTGAGGAAACAAACAACGACGAAGAAGAGGAAGATCTCGATTTGGAAGACGAGCCTGTTGAGAAGCTTCTAGAACCGTTCACGAAAGAGCAATTACACGTTCTCGTGAAGCAAGCCATTGAGAAGTATCCAGATCTGTCGGAGAATGTTCGCCAGCTTGCTGATGTGGACCCCGCTCACCGGAAAATTTTCGTCCATGGACTTGGATGGGATGCGACTGCGGAAACCCTAACCAGTGTGTTTCAGAAATACGGTGAAATTGAGGATTGTAAGGCGGTTACTGATAAGGTATCTGGAAAATCGAAGGGTTATGCTTTTATTTTGTTTAAGCATAGGAGTGGTTGTCGCAGGGCGCTGAAGCAGCCACAGAAGCAGATTGGTAACAGGACGACATCTTGTCAGTTGGCGTCTGCGGGGCCTGTTCCGGCGCCTCCGCCTAATGGACCGCCGGTTTCGGAGTATACACAGAGGAAGATTTTTGTAAGCAATGTGAGTTCTGATATTGATCCTCAGAAGTTGCTTGAGTTTTTTAGACAGTTTGGGGAAGTTGAAGATGGTCCTTTGGGTCTTGATAAGAATACTGGAAGGCCAAAGGGATTTGCTTTGTTTGTTTACAAGTCTGTTGAGAGTTCTAAGAAGGCTTTGGAAGAGCCAAATAAGGTTTTTGAGGGGCATACTTTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGGTACAAGGGTCATCATCAGCAGCCACAACATCATCATCAACAGCATCATTCCCACCATCACCATCATCAACCTCACTACAATTCGAGGAAAGAGAAGAACAAGTATTCCTCTGGTGGTGGACCATCACATGGTGGTGGTGGTGGTCACTTGATGGCGCCTCCTGGGCCTGTTGGGGGTTACAATCCTGGAGTCCCGGCTCAAGGATTGAATCCGGCACTTGGTCAGGCTTTATCAGCTTTGCTTGCTAATCAAGGAGCTGGGTTGGGGCTTGGGAATTTGCTTGGAGGTCTTGGTGGTGCACCTGTGAACCAGGCCGGGCCACCTCCTGCTGCGTATGGTAACCAGGCTGCTATGGGATATGGAAACCAGCCTGGGTTGCAACCACAGTACCAGAATCCTCAGTTGGGGCAGAGTGGTGGTGCTAGACCTCATCCTGGTCCGGGTGGCGCTCCTTACATGGGTCACTAG 1524 0.4915 MAKKRKLRSSDPEPTKPLETEIKQEVPEPQPETTADQEPTHENMAVDELITPKQEVEADPEEEEEQEPEQLAEEEEEEEEQGEDETLGNQNQQQDAAEVSNPAAASTVSTEANGAEETNNDEEEEDLDLEDEPVEKLLEPFTKEQLHVLVKQAIEKYPDLSENVRQLADVDPAHRKIFVHGLGWDATAETLTSVFQKYGEIEDCKAVTDKVSGKSKGYAFILFKHRSGCRRALKQPQKQIGNRTTSCQLASAGPVPAPPPNGPPVSEYTQRKIFVSNVSSDIDPQKLLEFFRQFGEVEDGPLGLDKNTGRPKGFALFVYKSVESSKKALEEPNKVFEGHTLYCQKAVDGPKGYKGHHQQPQHHHQQHHSHHHHHQPHYNSRKEKNKYSSGGGPSHGGGGGHLMAPPGPVGGYNPGVPAQGLNPALGQALSALLANQGAGLGLGNLLGGLGGAPVNQAGPPPAAYGNQAAMGYGNQPGLQPQYQNPQLGQSGGARPHPGPGGAPYMGH 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03020 507 MobiDBLite consensus disorder prediction 86 115 - -
Vivi7g03020 507 MobiDBLite consensus disorder prediction 347 415 - -
Vivi7g03020 507 MobiDBLite consensus disorder prediction 465 507 - -
Vivi7g03020 507 MobiDBLite consensus disorder prediction 356 380 - -
Vivi7g03020 507 Coils Coil 61 81 - -
Vivi7g03020 507 MobiDBLite consensus disorder prediction 1 130 - -
Vivi7g03020 507 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 48 359 - -
Vivi7g03020 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 252 IPR000504 GO:0003723
Vivi7g03020 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 348 IPR000504 GO:0003723
Vivi7g03020 507 MobiDBLite consensus disorder prediction 57 85 - -
Vivi7g03020 507 MobiDBLite consensus disorder prediction 1 26 - -
Vivi7g03020 507 MobiDBLite consensus disorder prediction 116 130 - -
Vivi7g03020 507 Gene3D - 260 402 IPR012677 -
Vivi7g03020 507 MobiDBLite consensus disorder prediction 472 490 - -
Vivi7g03020 507 SMART rrm1_1 176 248 IPR000504 GO:0003723
Vivi7g03020 507 SMART rrm1_1 272 344 IPR000504 GO:0003723
Vivi7g03020 507 Gene3D - 167 253 IPR012677 -
Vivi7g03020 507 Coils Coil 105 132 - -
Vivi7g03020 507 MobiDBLite consensus disorder prediction 240 267 - -
Vivi7g03020 507 SUPERFAMILY RNA-binding domain, RBD 255 366 IPR035979 GO:0003676
Vivi7g03020 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 341 IPR000504 GO:0003723
Vivi7g03020 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 244 IPR000504 GO:0003723
Vivi7g03020 507 SUPERFAMILY RNA-binding domain, RBD 164 258 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03020 Vivi-Chr7 94970442 94973328 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03020 267 350 C2H2 Transcription Factor Family AT2G19380 30.952 2.46e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03020 K12741 - gmx:100783742 570.081