LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi7g03006	ATGAGTCAGCCAAAGATTAAGCGTAGAGTCGGTATATACGAGATTGGGAGGACTATTGGGGAGGGATCCTTCGCAAAAGTGAAATTCGCAAGGAACTCTAAGACCGGTGAAGCCGTGGCTATCAAAATTATTGACAAGGAGAAAGTTCTCAGACACAAGATGTCTGAACAGATCAAGCGGGAAGTAGCTACGATGAAGTTAATCAAGCATCCAAATGTTGTTAGACTATATGAGGTCATGGGAAGCCGAACAAAAATATATATTGTATTGGAGTTTGTGACTGGCGGGGAGCTTTTCGACAAAATTGTAAACCATGGACGGATGGGTGAAAATGAAGCGCGTAGGTATTTCCAGCAGCTTATAAATGTTGTCGATTATTGTCATAGCAGAGGAGTCTTTCACCGAGACCTTAAGCCAGAAAATCTGCTTTTAGATTGTAATGGTGATCTTAAAGTCTCCGATTTCGGGTTGAGTGCACTCTCCCAGCAAGTTAGGGACGATGGACTTCTCCATACGACATGCGGAACTCCGAATTATGTTGCTCCAGAGGTTCTTACTGATAGAGGCTATGATGGAGCGAATGCGGACATATGGTCATGCGGAGTGATCCTCTTTGTATTGGTTGCAGGTTACTTACCTTTTGATGATCCTAATCTTATGGAACTCTATAAAAAAGTGAGCACGCGACGTTTCGACATTATATTTCCTATTTTACTCATTTACTTATTTTTGTTACGTGACTTTCGTTTGTTTCTTGATCCGCAGATCTCGTCTGCCAGTTTTACTTGCCCCCCGTGGCTTTCTTTCAGTGCGAGGAAATTAATCACTCGAATCTTGGATCCCAATCCTACGACGCGTATCACAATGGCCGAGATTTTGGAAGATGAATGGTTTAAGAAAGACTATAAGCCTGCGGTTTTTGAAGAGAGTGGCGAAACCAACCTCGATGATGTAGAAGCCGTCTTTAAAGATTCAGAAGAGCACCATGTGAAGGAAAAGAAAGAAGAGCAGCCAACATCGATGAATGCGTTTGAATTGATATCCATGTCGAAAGGACTCAACCTCGAAAACTTGTTTGATATAGAACAGGGATTTAAAAGGGAAACAAGGTTTACATCAACATCTTCGGCCGACGTGATAATCAACAAGATTGAAGAAGCTGCTAAACCTCTCGGCTTCGATGTACAGAAGAAAAACTTCAAGATGAGGCTTGCGAATTCGAAAGCCGGAAGGAAAGGAAACCTTAATGTTGCCACAGAGGTGTTTCAAGTGGCACCTTCTCTTCACATGGTTGAAGTAAGGAAAGCTAAAGGAGATACATTGGAGTTTCATAAGTTCTACAAGAAACTGTCAACAAGTTTGGAAGATGTTGTTTGGAAAACAGATGATGATATGCCAAAGAAAGAAGCAAAAGAAGCAAAGGAAGCAAAAGAAGCAAAAGCAGCAAAATGA	1452	0.4167	MSQPKIKRRVGIYEIGRTIGEGSFAKVKFARNSKTGEAVAIKIIDKEKVLRHKMSEQIKREVATMKLIKHPNVVRLYEVMGSRTKIYIVLEFVTGGELFDKIVNHGRMGENEARRYFQQLINVVDYCHSRGVFHRDLKPENLLLDCNGDLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLTDRGYDGANADIWSCGVILFVLVAGYLPFDDPNLMELYKKVSTRRFDIIFPILLIYLFLLRDFRLFLDPQISSASFTCPPWLSFSARKLITRILDPNPTTRITMAEILEDEWFKKDYKPAVFEESGETNLDDVEAVFKDSEEHHVKEKKEEQPTSMNAFELISMSKGLNLENLFDIEQGFKRETRFTSTSSADVIINKIEEAAKPLGFDVQKKNFKMRLANSKAGRKGNLNVATEVFQVAPSLHMVEVRKAKGDTLEFHKFYKKLSTSLEDVVWKTDDDMPKKEAKEAKEAKEAKAAK	483

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi7g03006	483	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	11	449	-	-
	Vivi7g03006	483	SUPERFAMILY	Protein kinase-like (PK-like)	11	315	IPR011009	-
	Vivi7g03006	483	Gene3D	Transferase(Phosphotransferase) domain 1	93	305	-	-
	Vivi7g03006	483	CDD	STKc_SnRK3	13	297	-	-
	Vivi7g03006	483	SMART	serkin_6	13	298	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi7g03006	483	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	132	144	IPR008271	GO:0004672\|GO:0006468
	Vivi7g03006	483	Gene3D	Phosphorylase Kinase; domain 1	3	92	-	-
	Vivi7g03006	483	Gene3D	Kinase associated domain 1, KA1	335	460	-	-
	Vivi7g03006	483	ProSiteProfiles	NAF domain profile.	336	360	IPR018451	GO:0007165
	Vivi7g03006	483	Pfam	Protein kinase domain	13	298	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi7g03006	483	FunFam	Non-specific serine/threonine protein kinase	6	238	-	-
	Vivi7g03006	483	ProSitePatterns	Protein kinases ATP-binding region signature.	19	42	IPR017441	GO:0005524
	Vivi7g03006	483	ProSiteProfiles	Protein kinase domain profile.	13	298	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi7g03006	483	FunFam	Non-specific serine/threonine protein kinase	335	460	-	-
	Vivi7g03006	483	MobiDBLite	consensus disorder prediction	461	483	-	-
	Vivi7g03006	483	CDD	CIPK_C	342	456	-	-
	Vivi7g03006	483	FunFam	Non-specific serine/threonine protein kinase	4	92	-	-
	Vivi7g03006	483	Pfam	NAF domain	338	397	IPR004041	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi7g03006	Vivi-Chr7	94884836	94887803	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi7g03006	5	441	CBL-interacting serine-threonine protein kinases	AT2G26980	71.167	0.0	646

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Vivi7g03006		Pkinase	1.1e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi7g03006	-		-	gmx:100794566	780.015