Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03001 ATGGGAAACTGCTTCAGAAAACCTGCTGTTTGTCATAATTCTTCAACAAGTTTATTTGGAAGTACAAAGACTCAAAGCAAAACAAAGCGGACTTCGAATTCTCCCGAGTCGAAAACCAAATTGGAAACTTCATGGTCGATTGATGAAAAATCCATCTCCAATGATGTTAAGTCCTTCAGCTTCAATGATCTAAAGGAGGCGACAAGGAACTTCCGGCAAGAAAATTTGATCGGCGAGGGAGGGTTTGGATTAGTCTATAAAGGATGGATAGATGAGAATACTGGTGCTCCTACAAAACCAGGAAATGGAATTGTAGTAGCCATTAAGCAGCTTAAACCAGAAAGTTTTCAAGGTCACAAGGAATGGCTTGCGGAAGTCAATTATTTAGGCCAACTTCACCATGAAAATTTGGTGAAGCTTATTGGTTATTGTTTAGAAGGTAAAAACAGGCTTCTGGTTTATGAGTTTATGCAGAAAGGAAGTTTGGAAAATCACTTATTTAGAAAAGGCGTTCAACCGATTTCCTGGATGACGCGAATCAATATCGCGATCGGTGTTGCAAGAGGACTAGCATTCTTACATTCCCTCGATGCAAATGTTATTTATCGCGATTTAAAGGCTTCAAACATTCTACTTGATTCGGATTTCAATGCAAATCTTTCCGATTTCGGCTTGGCAAGAGACGGTCCAACCGGGGATAACACTCATGTTTCAACTCGAATTATCGGAACGCATGGTTACGCTGCCCCAGAATATGTAGCTACAGGTCATTTAACACTGAGGAGCGACGTATACAGCTTCGGTGTCGTCCTGTTAGAGCTACTAACAGGACGGCGTGTAGTCGACGATGATAGACCGGCATATTCGGAAGAAACGCTGGTGGATTGGGCAATGCCTTTCTTGAGTGACAGCAGAAGAATATTGAGAATCATGGATACAAAATTAGGTGGTCAATACTCGAAGAAAGGAGCTCAAGCAGCAGCTGCACTTGTTCTAAAGTGTCTTCATACTGATCCTAAACATAGACCAACAATGGTAAATGTTTTGGCAGCATTGGAAGCATTACATTCCTCAAATTCTGTACCAAGAACACCAAAATCTGATCATAATCCTCATGCAACAAAGCATTCTAGTCATCATCATTCACATAAGTCAATTGCGAATAATACTCGAAAACATTGA 1182 0.4078 MGNCFRKPAVCHNSSTSLFGSTKTQSKTKRTSNSPESKTKLETSWSIDEKSISNDVKSFSFNDLKEATRNFRQENLIGEGGFGLVYKGWIDENTGAPTKPGNGIVVAIKQLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGYCLEGKNRLLVYEFMQKGSLENHLFRKGVQPISWMTRINIAIGVARGLAFLHSLDANVIYRDLKASNILLDSDFNANLSDFGLARDGPTGDNTHVSTRIIGTHGYAAPEYVATGHLTLRSDVYSFGVVLLELLTGRRVVDDDRPAYSEETLVDWAMPFLSDSRRILRIMDTKLGGQYSKKGAQAAAALVLKCLHTDPKHRPTMVNVLAALEALHSSNSVPRTPKSDHNPHATKHSSHHHSHKSIANNTRKH 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03001 393 Gene3D Phosphorylase Kinase; domain 1 46 156 - -
Vivi7g03001 393 SUPERFAMILY Protein kinase-like (PK-like) 42 352 IPR011009 -
Vivi7g03001 393 ProSiteProfiles Protein kinase domain profile. 71 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g03001 393 SMART serkin_6 71 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g03001 393 FunFam Serine/threonine-protein kinase BIK1 36 156 - -
Vivi7g03001 393 Pfam Protein tyrosine and serine/threonine kinase 74 351 IPR001245 GO:0004672|GO:0006468
Vivi7g03001 393 PANTHER OS01G0588500 PROTEIN-RELATED 28 356 - -
Vivi7g03001 393 MobiDBLite consensus disorder prediction 373 393 - -
Vivi7g03001 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Vivi7g03001 393 Gene3D Transferase(Phosphotransferase) domain 1 157 380 - -
Vivi7g03001 393 MobiDBLite consensus disorder prediction 16 40 - -
Vivi7g03001 393 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 157 366 - -
Vivi7g03001 393 CDD STKc_IRAK 77 355 - -
Vivi7g03001 393 ProSitePatterns Protein kinases ATP-binding region signature. 77 109 IPR017441 GO:0005524
Vivi7g03001 393 MobiDBLite consensus disorder prediction 359 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03001 Vivi-Chr7 94828842 94831445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03001 3 382 Glycoside Hydrolase AT3G07070 45.293 9.17e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi7g03001 PK_Tyr_Ser-Thr 5.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03001 - - gmx:102664409 627.861