Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02988 ATGGCATCATCATCTTTGCAACAAGAAAAAGGCAATCATGGTGATGATACTAAAAATATTATGTTGAGAAAAGGAAAATGGCTATCAGAAGAAGATGCATTATTAAGAGATTATGTGGAAAAATATGGAGCTAAAAAGTGGGATAAAGTACGAGAAAAAATAAAACTTGATAGAGATGGAAAAAGTTGTCGTTTTAGATGGTTAAATAGTCTAAAACCAAGTTTAAAGAAATGTCCATTTAATGAAGAAGAAGAGGAAAAACTTATTCGACTCTATAATAAGTTAGGACCTAAATGGTCTCAAATAATTTCAGAGTTTCCTAGAAGAACCGATAACGAATTAAAGAATTTTATTAATTCAAGAAAAAGAAGTTTAAAAAATTCTAGAAAGCATCTCATTCCAAAAAACATAAACCATGTTGATGAATTGAAGGACAATGTTGGAGCAATTAGTTACCAACAAAATAATGCCTCCCAAGAAGAAATAGCTCTATCAAGAATGGAATTCGATCATCAAAACATTATGCATGGTAACTATCTTGATCAAATTTATGATGAGAAAACTATCAACAACTTTGATCAATTTTCAACATTGGTTGATGATTCAAATATGCTATACAATATTGTGGGAACCCCTTCTTTAAGCAATCATATTGTGCCAACATTGAATGATAGGTTTCCTATACTCCCAGAATGTCCATACTTTCAAGATGAGGAAAATATCAACAACTTTGAACCACTTCTAAAATTGGTTGATGATTCAAATATACTATATAATAATGGGGAAAACACTTCGTTATCCATAGTACCAGATCTTCTTACACTCCCAGAATGTTCACACATTCAAAATAAGGAAGATACACGTCCATCATTTACATCAAATAATATGTTTTCTAATCAAGATCTCCCTCCGCTTCCACAATGTTGGTACAATCAAGATATGGATTATCAACATCCATTATTTTTATCAGAGGAGTTTTTTAATCAATATCCTCAAAATTCATATCTATCATCTCATGAGATTCAATATGAGATGTTAAAGCCTAATAGTCCACGTACTAATGGCTATCTAGAAGCCATATTATATCCACCAAAGATTTTGTAA 1104 0.3098 MASSSLQQEKGNHGDDTKNIMLRKGKWLSEEDALLRDYVEKYGAKKWDKVREKIKLDRDGKSCRFRWLNSLKPSLKKCPFNEEEEEKLIRLYNKLGPKWSQIISEFPRRTDNELKNFINSRKRSLKNSRKHLIPKNINHVDELKDNVGAISYQQNNASQEEIALSRMEFDHQNIMHGNYLDQIYDEKTINNFDQFSTLVDDSNMLYNIVGTPSLSNHIVPTLNDRFPILPECPYFQDEENINNFEPLLKLVDDSNILYNNGENTSLSIVPDLLTLPECSHIQNKEDTRPSFTSNNMFSNQDLPPLPQCWYNQDMDYQHPLFLSEEFFNQYPQNSYLSSHEIQYEMLKPNSPRTNGYLEAILYPPKIL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02988 367 SUPERFAMILY Homeodomain-like 23 116 IPR009057 -
Vivi7g02988 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Vivi7g02988 367 Gene3D - 24 76 - -
Vivi7g02988 367 Gene3D - 78 146 - -
Vivi7g02988 367 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Vivi7g02988 367 CDD SANT 79 122 IPR001005 -
Vivi7g02988 367 ProSiteProfiles Myb-like domain profile. 72 116 IPR001005 -
Vivi7g02988 367 FunFam MYB-related transcription factor 24 76 - -
Vivi7g02988 367 CDD SANT 26 71 IPR001005 -
Vivi7g02988 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 75 IPR017930 -
Vivi7g02988 367 SMART sant 76 124 IPR001005 -
Vivi7g02988 367 SMART sant 23 73 IPR001005 -
Vivi7g02988 367 Pfam Myb-like DNA-binding domain 27 88 - -
Vivi7g02988 367 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 9 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02988 Vivi-Chr7 94642847 94644401 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02988 24 178 MYB Transcription Factor Family AT2G26950 41.290 1.44e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi7g02988 Myb_DNA-bind_6 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02988 K09422 - vvo:131619743 763.066