Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02987 ATGGCATCACATTCTTTGCAACAAGAAAAAGGCAATCATGGTGATGATACTAAAAATATTGTGTTGAAAAAAGGAAAATGGCTACCAGAAGAAGATGCATTATTAAGAGATTATGTGAAAAAATATGGAGCTAAAAAATGGGATAAAGTACGAGAGAAAATAAAACTCAATAGAGATGGAAAAAGTTGTCGTTTTAGATGGTTAAATAGTCTAAAACCAAGTTTGAAAAGAGATCCATTTAGTGAAGAAGAAATACAAAAACTTGTTCGTCTCTATTGTGAGTTAGGACCTAAATGGTCTCAAATGGTTTCACAGAGTGTGATGAGGGGTTCTAGTAACCAAGAAAATAACGTCTCTCAAAAAGAAGAAATGACTCTACCAAGAGTAGAATTTGATCATCAAGATATTATGCAAGATAACTATCTAGATCAATTTTATTATGAGGAAAATATCAATTTTAAACCACTTTCAACGTTGGTTGATGATTCAAATATGATATACAATAATGTGGGAAGCTCTCCTTTAAGCAATCATATTGTTCCAACATTGAATGATAGGTTTCCTACACTCCCGCAAAGTTCATACTTTCAAGATAAGGAAAATATCAATTTTGAACCACTTCAAAAGTTGGATGATAATTCAAATATGTTATATAATAATGTGGAAACTACTTCTTTATCCATGAAACAAGATCTTCTTACACTCCCAGAATGTTCACACATTCAAAATAAGGAAGATACACGTCCATCATTTACATCAAATAATATGCTTTTTAATCAAGATCTCCCTCCGCTTCCACAATGTTGGTACAATCAAGATATGGATTATCAACATCCATTATTTTCATCTGAGGAGTTTTTTGATCAATATCCTCAAAATTCAATTCTATCATCTCATGAGATTCAATATGAGATGTTAAAGCCTAATAGTCCACGTACTAATGGCTATCTAGAAGCCATGTTATATCCACCAAAGATTTTGTAA 984 0.3171 MASHSLQQEKGNHGDDTKNIVLKKGKWLPEEDALLRDYVKKYGAKKWDKVREKIKLNRDGKSCRFRWLNSLKPSLKRDPFSEEEIQKLVRLYCELGPKWSQMVSQSVMRGSSNQENNVSQKEEMTLPRVEFDHQDIMQDNYLDQFYYEENINFKPLSTLVDDSNMIYNNVGSSPLSNHIVPTLNDRFPTLPQSSYFQDKENINFEPLQKLDDNSNMLYNNVETTSLSMKQDLLTLPECSHIQNKEDTRPSFTSNNMLFNQDLPPLPQCWYNQDMDYQHPLFSSEEFFDQYPQNSILSSHEIQYEMLKPNSPRTNGYLEAMLYPPKIL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02987 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 75 IPR017930 -
Vivi7g02987 327 SUPERFAMILY Homeodomain-like 25 101 IPR009057 -
Vivi7g02987 327 CDD SANT 26 71 IPR001005 -
Vivi7g02987 327 Gene3D - 23 76 - -
Vivi7g02987 327 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Vivi7g02987 327 SMART sant 23 73 IPR001005 -
Vivi7g02987 327 SMART sant 76 128 IPR001005 -
Vivi7g02987 327 FunFam MYB-related transcription factor 24 76 - -
Vivi7g02987 327 Pfam Myb-like DNA-binding domain 27 88 - -
Vivi7g02987 327 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 11 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02987 Vivi-Chr7 94594474 94596058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02987 18 103 MYB Transcription Factor Family AT3G11440 50.000 1.56e-23 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi7g02987 Myb_DNA-bind_6 7.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02987 K09422 - vvo:131619742 681.019