Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02982 ATGTCAAGTGGAGCAACACATTGGTGTTATGAATGTAGTCGGCCAATTGTGCTTGAAGGGAGAAACATTGTCTGCCCTTACTGTGATGACGGATTTGTACAAGAACTTGACGAGATGCGAGGCGTTACACCCCAAAATACCCTTCCGTCACGCTCTGGCGAGTTTCAACAAATGCCTGACTTATTCGATGCTATTCATGCTTTTATGGGGAACAGAGGTTCCGAAAACAGGTTTGGGCTTATGGACGCTGTTGATAATTTCATGAGGCATAGGATGGCTGGAATGCACCCGAACTTTGATGTTAGAGGGAGGTCTGGTTCGTCTGTCCCGGTTCCTGAACAGAGTTGGGGCGTCTATAGTTCTGGTCCGTTTTTAGTATTTCACGGTCAAGTTCCTGGATTAAACTTGCCTAATGGAAGCTCGAGAGGAGGTCCGAGGCGTGGTGATTTTGGCGACTACTTTATGGGTTCTGGTTTGGAAGAACTTATTGAACAACTCACCATGAATGATCGTCGTGGTCCACCCCCAGCTGCACGATCTTCAATTGATGCAATGCCGACGATTAGGATCACACAGGCGCATCTTCGCTCAGATTCACATTGTCCGGTCTGTAAAGAAAAATTCGAACTTGGTTCTGAAGCAAGAGAGATGCCATGCGACCATATTTACCATTCTGACTGTATTATTCCTTGGCTGGTTCAACATAACTCGTGTCCTGTTTGCCGTGTCGAGCTGCCACCTCAAGGACAAGTTAGTTCTCGTGGTGGTGGTAGTAGTCGAGGTTGGGGAGGAAGGAATGGTGGCAACAGTGGTGGAAATGGTAGCTCAAATAGCAGGGAGAGTGACCGTCAGAGCAATGGAAGGCGAAATCCGTTTTCGTTTCTGTGGCCATTCCGTTCTTCTTCTTCTAGTTCAAACAACAATCAATATTCTGAGGGAAGCACTTCTTCAACCAATGCTGAGCAGAATAATGGAACTAGTTACCATGGATGGCACGATAACTAA 1005 0.4667 MSSGATHWCYECSRPIVLEGRNIVCPYCDDGFVQELDEMRGVTPQNTLPSRSGEFQQMPDLFDAIHAFMGNRGSENRFGLMDAVDNFMRHRMAGMHPNFDVRGRSGSSVPVPEQSWGVYSSGPFLVFHGQVPGLNLPNGSSRGGPRRGDFGDYFMGSGLEELIEQLTMNDRRGPPPAARSSIDAMPTIRITQAHLRSDSHCPVCKEKFELGSEAREMPCDHIYHSDCIIPWLVQHNSCPVCRVELPPQGQVSSRGGGSSRGWGGRNGGNSGGNGSSNSRESDRQSNGRRNPFSFLWPFRSSSSSSNNNQYSEGSTSSTNAEQNNGTSYHGWHDN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02982 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 248 IPR013083 -
Vivi7g02982 334 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Vivi7g02982 334 SMART ring_2 201 241 IPR001841 -
Vivi7g02982 334 MobiDBLite consensus disorder prediction 247 334 - -
Vivi7g02982 334 SUPERFAMILY RING/U-box 181 248 - -
Vivi7g02982 334 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Vivi7g02982 334 CDD RING-H2_RNF126-like 201 242 - -
Vivi7g02982 334 Pfam Ring finger domain 200 242 IPR001841 -
Vivi7g02982 334 FunFam E3 ubiquitin-protein ligase RING1-like 165 248 - -
Vivi7g02982 334 MobiDBLite consensus disorder prediction 251 334 - -
Vivi7g02982 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 124 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02982 Vivi-Chr7 94496969 94499188 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02982 145 250 C3H Transcription Factor Family AT5G01980 43.519 8.15e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02982 K11982 - gmx:100813674 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04162 3 72988479 72990671 Vivi7g02982 7 94496969 94499188 ECH
Vivi7g02982 7 94496969 94499188 Vivi7g02982 7 94496969 94499188 ECH
Vivi3g06188 3 158289607 158291926 Vivi7g02982 7 94496969 94499188 PCT