Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02907 ATGGGTATGTTCGTTGTAGCACCATCTCCTTTTCATCACCACCACCATGAATCTCTCATCTCCGATTCTCATCCTCATTCTCTTAACCCCGCCACCGCCCTCGGCGTCGGGGTTATCCCTTTACTCACCGCTTCACCTTGTCTTGAAAATGAAAACATGTTAAACTTAAACACCAGAAGAAACCATAACCATAACCAAAACCAAAACCAACAAGGTATTCAATTTTGGCATGAACCACAACCACAACAACATCATCAACATCAACATCATCAGCAACAAAATTCACACTCACACTATTTGAAAAAACAAGGTTTTCTTGATCATCATAATACAAGTCCAACTAATTTAGTTCATCATGGTGGTAGTAGTAGTGGTGGTGGTGGAGGAGGATTAACTGCTTCCGGAACAAGCAGTGGTGGAGGAACGACAACTTGTCAAGATTGTGGTAACCAAGCGAAGAAAGATTGTAGTAATAGAAGATGTAGAACTTGTTGTAAAAGTAGAGGTTTTGATTGCCCTACTCATGTTAAGAGTACATGGGTACCTGCTGCTAGAAGAAGAGAACGTCTTGCTTCTGCGACGACAACCACCGTGGTTGCTGGTGGTGGTTCTAGTGGTTCAACTTCTGGTGCTAAAAAACCTAGACTCATAGCTTCACAAACTACTTCTCACACTTCCACTTCTAATACTACACCCCCTAGAAGCTTTGACACCACCTCTAGCCATCAAGATGCAGGTTTCAAAGAGTCAATGCCGGGTCAAGTTCGCGCACCAGCAGTATTCAAGTGCGTTAGAGTAACATCCGTAGACGATGGAAAAGACGAGTATGCATATCAAGCCGTAGTGAAGATCAATGGCCATGTTTTTAAAGGTTTTCTCTATGATCATGGTGTTGAGAATAGAGAAGTTTATCCGAACCTCTCCGAGCTTCATTTAGGTGGTGGAAGTGGGAATAGTGGAGGTGCAAATAGAAATGTTGCTTCATCTTCTTCACCAATGTTAGATCCTTCTCATGATGTTTATGCAGCAGCTTCAAGTGGAGGTTTACTTGGAAATTCAGGTTATGGTGGTAATCAAATAAATTGA 1086 0.4217 MGMFVVAPSPFHHHHHESLISDSHPHSLNPATALGVGVIPLLTASPCLENENMLNLNTRRNHNHNQNQNQQGIQFWHEPQPQQHHQHQHHQQQNSHSHYLKKQGFLDHHNTSPTNLVHHGGSSSGGGGGGLTASGTSSGGGTTTCQDCGNQAKKDCSNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERLASATTTTVVAGGGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSFDTTSSHQDAGFKESMPGQVRAPAVFKCVRVTSVDDGKDEYAYQAVVKINGHVFKGFLYDHGVENREVYPNLSELHLGGGSGNSGGANRNVASSSSPMLDPSHDVYAAASSGGLLGNSGYGGNQIN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02907 361 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 31 343 IPR007818 GO:0003700|GO:0006355
Vivi7g02907 361 MobiDBLite consensus disorder prediction 191 251 - -
Vivi7g02907 361 MobiDBLite consensus disorder prediction 191 247 - -
Vivi7g02907 361 MobiDBLite consensus disorder prediction 107 143 - -
Vivi7g02907 361 MobiDBLite consensus disorder prediction 79 98 - -
Vivi7g02907 361 NCBIfam LRP1 C-terminal domain 251 298 IPR006511 -
Vivi7g02907 361 Pfam Domain of unknown function (DUF702) 142 299 - -
Vivi7g02907 361 MobiDBLite consensus disorder prediction 105 143 - -
Vivi7g02907 361 NCBIfam putative zinc finger domain, LRP1 type 144 186 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02907 Vivi-Chr7 93405967 93408369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02907 3 341 C2H2 Transcription Factor Family AT5G12330 48.276 9.16e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vivi7g02907 DUF702 9.2e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02907 - - psat:127117835 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g02907 7 93405967 93408369 Vivi7g02907 7 93405967 93408369 ECH