Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02894 ATGGCTTTCTTTAGGAACTTCGTAAATGATACAGTCTCACACGGTGTCATGGAAGATAAAGATCTAGGACAGGATGCTAATAATATTCATAGATCAGTAGTTAATGAGTGTACTGATGCAACTTCTAGTGAGAAAGAGTTTGATATGAACTTGGAGGCACAATATGAGAGTGATGGTGGACCAGATGGTGCCTGTAGACTGCAAAATGAGGGTACAGCTAATGATGGAGATGCTTTGAGAGAATCCAACTTACAGGCTGTTGGTAGTAAAGCATCTACGGCTGGAAGGTGGGGTTCGACATTTTGGAAGGACTGCCAACCAATGTTCCCTCAAAATGGCTTGGATTCTGGAAAGGAATCAAAAAGTGGATCAGACTACAGAAATGCAGGGGGGTCCGAAGATAATTCTTTGGATGGAGAAACAGGAAGGGTAGACTCAGAAGATGATGATGGACAAAAAGAGGCAGGTAAAGGCCGAAGAAGTCACTCTGATGTTCCTGCAGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGATCAAAGTGACTCGTTGCATTATAATGGGATTCACAAGCCCACTGGACGAAATTCACAGCCTCATTTGATGTCTAATTCCGTGAAAAGAACCGTGCGTAGGAAATCTAGGATTTCAGATGATGATGATGGTGATGGTGATGTTGACTATGAAGAAGAGGATGAAGTAGATGAAGATGATCCTGATGATGCAGATTTTGAGCCTGTCGAGAATAGCCATGCCTTAAACAAGGATAAAAATTGGGAAGGTATAGGATCTGATGAAAATGATGACAGTGATGAAAGTCTAGATCTCTCTGATGACGACGAATCTTTCTATACCAAAAAACCCAAGGGAAGGCAACAAGGTAAAGTTAGAAAAAGTATAAAATCTACCAGAGATCGCAAATCAGGTATTGCATCTGGCAGACAAAGAAGATTGAAATCATCTTTTGAAGACAATGAGTCAACAACAGAGGATTCTGACAGTGATAGTGATGACGATTTCAAAAGCACACGAAAGAGAAGTTTCAATGTCCGCAAGAATAACAACCGCTTTTCTGTAACAAGTTTTTCTACGCACAACAGTGACGTTCGCACTTCTCGTAGGGCGGTTAGGAAGATATCATATGTTGAAAGTGACGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAAAAGCCTCAAAAGGAAGAAATTGAAGAGGATGATGGCGACTCTATTGAAAAGGTGCTTTGGCATCAGCTGAAGGGAACATCTGAAGATGCTCAAAGGAATAGTAGATCATCCGAGCCTGTTTTAACGAGTCACTTGTTTGATTCTGAATTTGATTGGAATGAGATGGAATTTTTGATAAAATGGAAGGGGCAGTCTCATTTGCACTGTCAATGGAAGTCTTTTGTAGAGCTACAAAATCTCAGTGGCTTTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAGGACATCAGATACCGAAAGACAATCTCAAGGGAGGAGATTGAGGTCTATGATGTGAGCAAGGAGATGGATTTAGAAATTATCAGGCAGAACAGTCAGGTGGAAAGAATAATTGCAGATAGGATCCATAAAGATAATTTTGGCAATGTTATCCCCGAATACCTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGTGACTTGGGAAAAGGACACTGATATCTCTTTTGCTCAACATTCAATTGATGAATATAGGGTTCGAGAGGCTGCAATGTCTGTTCAAGGAAAGGTGGTGGATTCCCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGCTGGAGAAATGATACAAATGTGATTTTAGCTGATGAAATGGGTCTTGGAAAAACTGTTCAGTCAGTGTCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGCCCTTTTCTTGTCGTTGTGCCGTTGTCTACTTTATCAAACTGGGCCAAAGAATTTAGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTGGGTACTCGAGCAAGTCGAGAGGTTTGTCAACAGTATGAATTTTATGATGACAAAAAGCCCGGTAGACCAATAAAGTTCAATGCACTGTTGACTACATATGAAGTGATTTTGAAAGATAAGGCCGTTCTCTCCAAGATCAAATGGAATTATTTGATGGTAGATGAAGCTCATAGACTAAAAAATAGCGAGGCACAGTTGTATACTTCCCTTTTAGAATTTAGCACCAAGAATAAGTTGCTCATCACCGGTACTCCGCTACAAAACAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATCCTAACAAGTTCAAAAGCAAGGATGAGTTTGTTCAAAACTATAAGAATTTGAGTTCTTTCCATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGGCCACACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCTTTACCCCCCAAAATTGAGCGCATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAATGGATTTTGGAACGTAACTTTCAAAATTTAAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTGAAAAAGTGTTGCAACCATCCCTTCCTATTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCTGGAGGAAGTGACAGTAATAAACTTGAGAGAATTGTTTTTAGCAGTGGCAAGCTTGTGATACTCGATAAGCTGCTTGTTAGATTGCATGAAACCAAGCACCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTGGATATATTGGCGCAGTATTTGTCACTTCGAGGGTTTCAATTTCAAAGACTTGATGGCAGTACAAAATCTGAGGTACGGCAGCAGGCAATGGAGCATTTCAATGCGCCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGAGCAGGAGGTCTAGGTATCAACCTTGCCACGGCAGACACTGTCATTATATTTGATTCAGACTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGATGTTGTTAACATATATAGATTTGTGACGAGCAAAAGTGTAGAAGAAGATATTCTGGAGCGTGCCAAGAAAAAGATGGTTCTGGACCACTTGGTGATTCAAAAACTGAATGCTGAAGGTAGATTGGAGAAGAAAGAAGCCAAAAAGGGAGGAAGTTATTTTGATAAAAATGAGCTGTCTGCAATCTTACGGTTTGGAGCAGAAGAGCTTTTTAAGGAAGAAAGAAATGAAGAAGAAAGCAAGAAACGACTCCAAAGTATGAATATAGATGAGATTCTTGAAAGAGCTGAGAAGGTTGAAGAGAAGACGGATGAAGGAGAACAAGGAAGCGAGTTATTAAGTGCATTTAAGGTTGCCAATTTTTGCAATGGTGAAGATGATGCAAGTTTTTGGAGTCGTTGGATAAAGCCTGATGCTGTATGCCAAGCTGAGGAAGCTCTTGCTCCACGTTCTGCAAGAAATATTAAAAGCTATGCCGAGGCTGATCCATCTGAAAGGAGTAATAAAAGGAAAAAGAAGGAATTTGAACCACCTGAGCGAGTTCAGAAACGCCGTAAAGCAGAGTATTCAGCTCCTGCAGTACCAATGGTTGATGGAGCTTCTGTCCAAGTTAGAAGTTGGTCATATGGGAATTTATCTAAAAGAGACGCACTCCGTTTTTCTCGTGCTGTCATGAAATTCGGGAATGAGAACCAAATAGATTTAATTGCGGCCGACGTTGGTGGCGCAGTTGTGGCAGCTCCTCCTGAAGCACAGATAGAACTTTTCAATGCACTAATTGATGGTTGTTCAGAAGCAGTGGAAATTGGAAATCTAGACCCAAAGGGGCCTGTGCTAGATTATTTTGGTGTCCCAGTGAAAGCAAATGACATAGTTACTCGTGTCCAAGAACTTCAACTCCTAGCAAAGCGCATTGGCCGGTATGAAGATCCCATTGCACAATTCCGTGTTTTATCGTATCTCAAACCTTCAAACTGGTCCAAAGGTTGTGGGTGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAATACATTACCATGGATTTGGTAATTGGGAAAAGATTAGATTAGATGAAAGGCTTGGTCTTTCGAAAAAAATAGCACCTGTAGAACTCCAAAACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTTCTGGAACAAGAACTTGTTGTTCTTGGGGTAAAAAATGTGAATAGCAGAGCTACACGGAAGCCTACCAAGAAAGAGAAAGAACAAACAATGAATATCTCACTGTTGCGCGGACATGAGAATAAGAAAAAATCGGGTTCTGCTAATGTCCAAATGAGAAAGGATAGGTTTCAGAAACCCCAAAAAGCTGAACCTATTATAAAAGAGGAAGGTGAAATGTCTGATAATGAAGAAGTATATGAGCAGTTTAAGGATGTAAAATGGATGGAATGGTGTCAAGACGTAATGGTTGAAGAAACAAAAACTTTGGAACGTCTTAAGAGATTGCAGAGGACTAGTGCTGATCTTCCAAAGGAAAAGGTTCTTTCAAAAATACGTCACTATTTACAACTTCTTGGGCGAAGGATTGATCAAATTGTGTTAGAAAATGAAGTGGAACCCTATAAGCAAGATAGGATGACTGTCCGACTGTGGAAATATGTATCCACCTTTTCCCATCTTTCAGGGGAGAGACTTCATCAAATATATTCCAAACTTAAACAGGAACAAAATGACGAGGCTGGGGTTGGTGCTTCTGTTTCATTTAGCAGAAATGGAAACCCATTCCATCGCCACATGGAGAGGCAAAGAGGACTAAAAAATATGGCTAACTACCAAATGTCAGAACCCGACAATAATACAGGAAAATCTGAGGCATGGAAACGGAGAAGAAGATCTGAAAGTGATGATCATTTCCAGGGTCTACCTCCACCTCAAAGAACCGCAAGTAATGGGATCCGGATTACGGATCCTAAATCACTCGGGATCCTTGGTGCTGGACCATCTGACAAACGCTTTGTTAGTGGGAAACCTTTGAAAACACAACCTGGTGGGGTTCCTTCAAGTCAAGGTTTTTCCTAA 5220 0.4067 MAFFRNFVNDTVSHGVMEDKDLGQDANNIHRSVVNECTDATSSEKEFDMNLEAQYESDGGPDGACRLQNEGTANDGDALRESNLQAVGSKASTAGRWGSTFWKDCQPMFPQNGLDSGKESKSGSDYRNAGGSEDNSLDGETGRVDSEDDDGQKEAGKGRRSHSDVPAEEMLSDEYYEQDGEDQSDSLHYNGIHKPTGRNSQPHLMSNSVKRTVRRKSRISDDDDGDGDVDYEEEDEVDEDDPDDADFEPVENSHALNKDKNWEGIGSDENDDSDESLDLSDDDESFYTKKPKGRQQGKVRKSIKSTRDRKSGIASGRQRRLKSSFEDNESTTEDSDSDSDDDFKSTRKRSFNVRKNNNRFSVTSFSTHNSDVRTSRRAVRKISYVESDESEEADEGKKKKPQKEEIEEDDGDSIEKVLWHQLKGTSEDAQRNSRSSEPVLTSHLFDSEFDWNEMEFLIKWKGQSHLHCQWKSFVELQNLSGFKKVLNYTKKIMEDIRYRKTISREEIEVYDVSKEMDLEIIRQNSQVERIIADRIHKDNFGNVIPEYLVKWQGLSYAEVTWEKDTDISFAQHSIDEYRVREAAMSVQGKVVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYDDKKPGRPIKFNALLTTYEVILKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTSLLEFSTKNKLLITGTPLQNSVEELWALLHFLDPNKFKSKDEFVQNYKNLSSFHENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGGSDSNKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAQYLSLRGFQFQRLDGSTKSEVRQQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQDVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNEEESKKRLQSMNIDEILERAEKVEEKTDEGEQGSELLSAFKVANFCNGEDDASFWSRWIKPDAVCQAEEALAPRSARNIKSYAEADPSERSNKRKKKEFEPPERVQKRRKAEYSAPAVPMVDGASVQVRSWSYGNLSKRDALRFSRAVMKFGNENQIDLIAADVGGAVVAAPPEAQIELFNALIDGCSEAVEIGNLDPKGPVLDYFGVPVKANDIVTRVQELQLLAKRIGRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLSKKIAPVELQNHETFLPRAPNLRDRANALLEQELVVLGVKNVNSRATRKPTKKEKEQTMNISLLRGHENKKKSGSANVQMRKDRFQKPQKAEPIIKEEGEMSDNEEVYEQFKDVKWMEWCQDVMVEETKTLERLKRLQRTSADLPKEKVLSKIRHYLQLLGRRIDQIVLENEVEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQNDEAGVGASVSFSRNGNPFHRHMERQRGLKNMANYQMSEPDNNTGKSEAWKRRRRSESDDHFQGLPPPQRTASNGIRITDPKSLGILGAGPSDKRFVSGKPLKTQPGGVPSSQGFS 1739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02894 1739 Pfam Domain of unknown function (DUF4208) 1527 1618 IPR025260 -
Vivi7g02894 1739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 841 1122 IPR027417 -
Vivi7g02894 1739 MobiDBLite consensus disorder prediction 138 169 - -
Vivi7g02894 1739 SMART ultradead3 613 809 IPR014001 -
Vivi7g02894 1739 Gene3D - 399 525 - -
Vivi7g02894 1739 Pfam Chromo (CHRromatin Organisation MOdifier) domain 526 578 IPR023780 -
Vivi7g02894 1739 SMART chromo_7 523 582 IPR000953 -
Vivi7g02894 1739 SMART chromo_7 410 493 IPR000953 -
Vivi7g02894 1739 MobiDBLite consensus disorder prediction 113 135 - -
Vivi7g02894 1739 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 629 801 IPR014001 -
Vivi7g02894 1739 MobiDBLite consensus disorder prediction 1656 1739 - -
Vivi7g02894 1739 ProSiteProfiles Chromo and chromo shadow domain profile. 412 500 IPR000953 -
Vivi7g02894 1739 MobiDBLite consensus disorder prediction 1668 1684 - -
Vivi7g02894 1739 MobiDBLite consensus disorder prediction 1208 1236 - -
Vivi7g02894 1739 MobiDBLite consensus disorder prediction 248 267 - -
Vivi7g02894 1739 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 848 1078 - -
Vivi7g02894 1739 Pfam SNF2-related domain 636 905 IPR000330 GO:0005524|GO:0140658
Vivi7g02894 1739 Coils Coil 1116 1136 - -
Vivi7g02894 1739 CDD SF2_C_SNF 924 1058 - -
Vivi7g02894 1739 Gene3D - 1344 1448 - -
Vivi7g02894 1739 SMART DUF4208_2 1514 1619 IPR025260 -
Vivi7g02894 1739 Gene3D - 527 579 - -
Vivi7g02894 1739 MobiDBLite consensus disorder prediction 108 351 - -
Vivi7g02894 1739 MobiDBLite consensus disorder prediction 306 329 - -
Vivi7g02894 1739 SUPERFAMILY Chromo domain-like 504 578 IPR016197 -
Vivi7g02894 1739 ProSiteProfiles Chromo and chromo shadow domain profile. 525 589 IPR000953 -
Vivi7g02894 1739 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 233 1669 - -
Vivi7g02894 1739 MobiDBLite consensus disorder prediction 383 411 - -
Vivi7g02894 1739 MobiDBLite consensus disorder prediction 224 247 - -
Vivi7g02894 1739 FunFam Photoperiod-independent early flowering 1 587 861 - -
Vivi7g02894 1739 FunFam protein CHROMATIN REMODELING 5 isoform X2 527 579 - -
Vivi7g02894 1739 MobiDBLite consensus disorder prediction 189 208 - -
Vivi7g02894 1739 SMART helicmild6 963 1047 IPR001650 -
Vivi7g02894 1739 CDD CD2_tandem 523 578 - -
Vivi7g02894 1739 MobiDBLite consensus disorder prediction 1480 1502 - -
Vivi7g02894 1739 Pfam Helicase conserved C-terminal domain 934 1047 IPR001650 -
Vivi7g02894 1739 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 937 1088 IPR001650 -
Vivi7g02894 1739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 838 IPR027417 -
Vivi7g02894 1739 Coils Coil 1077 1097 - -
Vivi7g02894 1739 Gene3D - 608 847 IPR038718 -
Vivi7g02894 1739 SUPERFAMILY Chromo domain-like 409 492 IPR016197 -
Vivi7g02894 1739 CDD CD1_tandem 410 490 - -
Vivi7g02894 1739 MobiDBLite consensus disorder prediction 1203 1237 - -
Vivi7g02894 1739 Gene3D - 848 1078 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02894 Vivi-Chr7 93149431 93170174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02894 639 1074 RAD5 or RAD16-like Gene Family AT1G02670 25.992 1.86e-36 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi7g02894 SNF2_N 2.5e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02894 K11367 - gmx:100792398 2895.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g02894 7 93149431 93170174 Vivi7g02894 7 93149431 93170174 ECH