Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02892 ATGATTACCGCTATTCTCCGAAGAGCTTCTTCATCACTCTCCCGACGCGCCATCCCCGCCGCCGAGGCTCTCCTTTCCTCCACCGCCTCCGCCGAGCTCCGACAACTCTCTGCTCTCACACCCAAATCCTTCCACTCTAAATCACAACCCTTGCTATTTCGTGCCTCTTCGGCTTCCCGCGCTGGTTACGCTGCTGAAGCTTTTCCATTTGAGGAACCAGCGAAAGCGAACGGTGAGGATGGTCTCGAGATCGCGAAGCTGGGGATTTCTCAGGATATTGTTTCTGCTCTGGAAAAGAAAGGAATCACTAAGCTTTTTCCCATTCAGAGGGCTGTCTTGGAGCCTGCTATGCAAGGTCGTGATATGATCGGTCGTGCTAGAACAGGAACTGGAAAAACTCTTGCTTTTGGGATTCCCATCATTGATAAGATCATTCAGTTTAATGCTAAACATGGGCGAGGAAGGGATCCTTTAGCTTTGGTTTTGGCTCCGACTAGGGAACTTGCGAAGCAGGTTGAGAAGGAATTCTATGAGGCGGCGCCTAATTTGGATACTATCTGTGTTTATGGGGGTACACCGATCTCTCAGCAAATGAGGCAGCTTGATTATGGTGTTGATATAGCGGTTGGGACACCGGGGAGAATTATTGATCTTCTTAATAGAGGTGCTCTGAATTTGAAGGAAGTTCAGTTTGTTATTCTTGATGAAGCTGATCAGATGCTTCAAGTGGGATTTCAGGAAGATGTGGAGAAGATCTTGGAGAGGTTGCCTGCAAAGAGGCAGACTCTTATGTTTTCTGCAACTATGCCTACTTGGATAAAGCAGTTAACACGGAATTACCTAAAAGATCCAATAACCATTGATCTTGTTGGAGATTCCGATCAGAAGCTGGCAGATGGAATTTCACTCTTGTCAGTTGCATCTGATGCATACGTCAAAGCAGGAATTATTGTTCCTCTAATAAAAGAACATGCAAAGGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCTGATCGAATATCACATGGTATGTCAAAAAGTATTCCATGTGAGCCATTGCATGGAGATATATCACAAGCCCAGAGAGAAAGAACTCTTGCTGGATTCAGAAATGGTCATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATACCTAATGTTGATCTTGTAATTCATTACGAGCTTCCCAATAATTCAGAGATATTTGTTCACCGATCTGGAAGAACTGGTCGTGCTGGTAAGAAAGGAACGGCTATTCTCATATATTCTGAAGATCAATCCAGGACTCTTAGGACTATTGAGCGCGATGTAGGCTGTAGATTTCAAGAGTTACCAAAGATTGCCGTTGATAGTGGATCAGTGTCTGCATTTGGTAGCATGGGTGGTGGGCGATTTGGTTCATTTGGTGGAAGTTCAAGTGGCCAATTTGGTGGTGGAGGTTTTAGCCGTGGTAGCCGTTCTGGGGGCTATGGTAATTCAAGTGATAGGTTTTCTGGTTCAAGACCATCTGGAGGGGGGTTTTCTGGCAATTCATCCGGTGGATATGGCGGATCAAGCTCTGGTCGTTTCGGCTCCTTTGGTTCAGGTGATTCAGGTAGTAGATCTGGTGGATCATCCGGTGGATTTAACTCTAGCCGGCAAGGTGGTTTTGGCGGTTTTGGTGGTTCAGATCGCTCCAGTGGTTTTGGAAATTTTGGGTCGGGTAAACCTAGCGCGTTTGGTGATCGCCGTGGCAGGGATTGA 1767 0.459 MITAILRRASSSLSRRAIPAAEALLSSTASAELRQLSALTPKSFHSKSQPLLFRASSASRAGYAAEAFPFEEPAKANGEDGLEIAKLGISQDIVSALEKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIIDKIIQFNAKHGRGRDPLALVLAPTRELAKQVEKEFYEAAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVILDEADQMLQVGFQEDVEKILERLPAKRQTLMFSATMPTWIKQLTRNYLKDPITIDLVGDSDQKLADGISLLSVASDAYVKAGIIVPLIKEHAKGGKCIVFTQTKRDADRISHGMSKSIPCEPLHGDISQAQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAILIYSEDQSRTLRTIERDVGCRFQELPKIAVDSGSVSAFGSMGGGRFGSFGGSSSGQFGGGGFSRGSRSGGYGNSSDRFSGSRPSGGGFSGNSSGGYGGSSSGRFGSFGSGDSGSRSGGSSGGFNSSRQGGFGGFGGSDRSSGFGNFGSGKPSAFGDRRGRD 588
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02892 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 287 IPR014001 -
Vivi7g02892 588 Gene3D - 83 291 IPR027417 -
Vivi7g02892 588 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 73 462 - -
Vivi7g02892 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 316 460 IPR001650 -
Vivi7g02892 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 442 IPR027417 -
Vivi7g02892 588 Gene3D - 309 463 IPR027417 -
Vivi7g02892 588 CDD SF2_C_DEAD 313 430 - -
Vivi7g02892 588 Pfam DEAD/DEAH box helicase 106 275 IPR011545 GO:0003676|GO:0005524
Vivi7g02892 588 CDD DEADc 93 288 - -
Vivi7g02892 588 MobiDBLite consensus disorder prediction 484 558 - -
Vivi7g02892 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 82 110 IPR014014 GO:0003724
Vivi7g02892 588 FunFam ATP-dependent RNA helicase RhlE 74 290 - -
Vivi7g02892 588 Pfam Helicase conserved C-terminal domain 316 421 IPR001650 -
Vivi7g02892 588 SMART ultradead3 101 304 IPR014001 -
Vivi7g02892 588 SMART helicmild6 341 421 IPR001650 -
Vivi7g02892 588 MobiDBLite consensus disorder prediction 484 588 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi7g02892 Vivi-Chr7 93109825 93114213 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02892 80 458 Eukaryotic Initiation Factors Gene Family AT3G19760 33.161 6.94e-69 227