Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi7g02892 | ATGATTACCGCTATTCTCCGAAGAGCTTCTTCATCACTCTCCCGACGCGCCATCCCCGCCGCCGAGGCTCTCCTTTCCTCCACCGCCTCCGCCGAGCTCCGACAACTCTCTGCTCTCACACCCAAATCCTTCCACTCTAAATCACAACCCTTGCTATTTCGTGCCTCTTCGGCTTCCCGCGCTGGTTACGCTGCTGAAGCTTTTCCATTTGAGGAACCAGCGAAAGCGAACGGTGAGGATGGTCTCGAGATCGCGAAGCTGGGGATTTCTCAGGATATTGTTTCTGCTCTGGAAAAGAAAGGAATCACTAAGCTTTTTCCCATTCAGAGGGCTGTCTTGGAGCCTGCTATGCAAGGTCGTGATATGATCGGTCGTGCTAGAACAGGAACTGGAAAAACTCTTGCTTTTGGGATTCCCATCATTGATAAGATCATTCAGTTTAATGCTAAACATGGGCGAGGAAGGGATCCTTTAGCTTTGGTTTTGGCTCCGACTAGGGAACTTGCGAAGCAGGTTGAGAAGGAATTCTATGAGGCGGCGCCTAATTTGGATACTATCTGTGTTTATGGGGGTACACCGATCTCTCAGCAAATGAGGCAGCTTGATTATGGTGTTGATATAGCGGTTGGGACACCGGGGAGAATTATTGATCTTCTTAATAGAGGTGCTCTGAATTTGAAGGAAGTTCAGTTTGTTATTCTTGATGAAGCTGATCAGATGCTTCAAGTGGGATTTCAGGAAGATGTGGAGAAGATCTTGGAGAGGTTGCCTGCAAAGAGGCAGACTCTTATGTTTTCTGCAACTATGCCTACTTGGATAAAGCAGTTAACACGGAATTACCTAAAAGATCCAATAACCATTGATCTTGTTGGAGATTCCGATCAGAAGCTGGCAGATGGAATTTCACTCTTGTCAGTTGCATCTGATGCATACGTCAAAGCAGGAATTATTGTTCCTCTAATAAAAGAACATGCAAAGGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCTGATCGAATATCACATGGTATGTCAAAAAGTATTCCATGTGAGCCATTGCATGGAGATATATCACAAGCCCAGAGAGAAAGAACTCTTGCTGGATTCAGAAATGGTCATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATACCTAATGTTGATCTTGTAATTCATTACGAGCTTCCCAATAATTCAGAGATATTTGTTCACCGATCTGGAAGAACTGGTCGTGCTGGTAAGAAAGGAACGGCTATTCTCATATATTCTGAAGATCAATCCAGGACTCTTAGGACTATTGAGCGCGATGTAGGCTGTAGATTTCAAGAGTTACCAAAGATTGCCGTTGATAGTGGATCAGTGTCTGCATTTGGTAGCATGGGTGGTGGGCGATTTGGTTCATTTGGTGGAAGTTCAAGTGGCCAATTTGGTGGTGGAGGTTTTAGCCGTGGTAGCCGTTCTGGGGGCTATGGTAATTCAAGTGATAGGTTTTCTGGTTCAAGACCATCTGGAGGGGGGTTTTCTGGCAATTCATCCGGTGGATATGGCGGATCAAGCTCTGGTCGTTTCGGCTCCTTTGGTTCAGGTGATTCAGGTAGTAGATCTGGTGGATCATCCGGTGGATTTAACTCTAGCCGGCAAGGTGGTTTTGGCGGTTTTGGTGGTTCAGATCGCTCCAGTGGTTTTGGAAATTTTGGGTCGGGTAAACCTAGCGCGTTTGGTGATCGCCGTGGCAGGGATTGA | 1767 | 0.459 | MITAILRRASSSLSRRAIPAAEALLSSTASAELRQLSALTPKSFHSKSQPLLFRASSASRAGYAAEAFPFEEPAKANGEDGLEIAKLGISQDIVSALEKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIIDKIIQFNAKHGRGRDPLALVLAPTRELAKQVEKEFYEAAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVILDEADQMLQVGFQEDVEKILERLPAKRQTLMFSATMPTWIKQLTRNYLKDPITIDLVGDSDQKLADGISLLSVASDAYVKAGIIVPLIKEHAKGGKCIVFTQTKRDADRISHGMSKSIPCEPLHGDISQAQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAILIYSEDQSRTLRTIERDVGCRFQELPKIAVDSGSVSAFGSMGGGRFGSFGGSSSGQFGGGGFSRGSRSGGYGNSSDRFSGSRPSGGGFSGNSSGGYGGSSSGRFGSFGSGDSGSRSGGSSGGFNSSRQGGFGGFGGSDRSSGFGNFGSGKPSAFGDRRGRD | 588 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi7g02892 | 588 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 113 | 287 | IPR014001 | - | |
Vivi7g02892 | 588 | Gene3D | - | 83 | 291 | IPR027417 | - | |
Vivi7g02892 | 588 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 73 | 462 | - | - | |
Vivi7g02892 | 588 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 316 | 460 | IPR001650 | - | |
Vivi7g02892 | 588 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 156 | 442 | IPR027417 | - | |
Vivi7g02892 | 588 | Gene3D | - | 309 | 463 | IPR027417 | - | |
Vivi7g02892 | 588 | CDD | SF2_C_DEAD | 313 | 430 | - | - | |
Vivi7g02892 | 588 | Pfam | DEAD/DEAH box helicase | 106 | 275 | IPR011545 | GO:0003676|GO:0005524 | |
Vivi7g02892 | 588 | CDD | DEADc | 93 | 288 | - | - | |
Vivi7g02892 | 588 | MobiDBLite | consensus disorder prediction | 484 | 558 | - | - | |
Vivi7g02892 | 588 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 82 | 110 | IPR014014 | GO:0003724 | |
Vivi7g02892 | 588 | FunFam | ATP-dependent RNA helicase RhlE | 74 | 290 | - | - | |
Vivi7g02892 | 588 | Pfam | Helicase conserved C-terminal domain | 316 | 421 | IPR001650 | - | |
Vivi7g02892 | 588 | SMART | ultradead3 | 101 | 304 | IPR014001 | - | |
Vivi7g02892 | 588 | SMART | helicmild6 | 341 | 421 | IPR001650 | - | |
Vivi7g02892 | 588 | MobiDBLite | consensus disorder prediction | 484 | 588 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi7g02892 | Vivi-Chr7 | 93109825 | 93114213 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi7g02892 | 80 | 458 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 33.161 | 6.94e-69 | 227 |