Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02848 ATGGATAATTCAAATGAAGCATCATCATCATTGAGTTTTGTATCATCACACTTATCAAATGCTTCAAGCAATACTCACAATGAACATGTGGCAAATATTGAAATTGTGAGTTTGAATAAGCTCAGTGGAAGCCTTGAGAAGCTATTGAGTGATGTTGTTGATTATGATTACTGTGATGCTGAGATTGTTGTTGAAGATATTCCGGTCGGTATTCATCGATGTATACTGGCTTCGCGGAGTCAGTTTTTTCATGAACTTTTTAAGAAAGGAAAAGATGGAGATTCGAAGGAAGGAAAGGGAAAGCCGAGTTATCAGATGAAAAATTTGGTGTGTTATGGTAGTGTTGGATATGAAGCTTTTGTTGTTTTTTTGCATTATTTGTATACCGGAAAGTTGAAGGCTCCACCAACAGAAGTGATGACTTGTGTTGATGAAGCTTGTATTCATGATTCGTGTCGTCCGGCTATCGATTATGCGCTGGAACTTATTTATGCTTCTTCCACATTTCAGATGAAAGAGCTTGTTTTGCTTTTTCAGAGGTATCTTCTAAATTTTGTTGATAAGGCGCTCGTAGAAGATGTCATTCCGATCCTTGTTGCTGCTAATCATTGCCAACTAGAACAGCTTCTCACTCATTGCATTCAGAGAGTAGCGAGGTCGGACATGGACATCATATCTTTGGAAAGAGAACTTCCATACGAAGTTATGACCGAAATCAAATCTCTCAGAGTCCAATCTCTTCCAGAATCAACGCCCGATGCGATGGAAGTAGAGCCTGTGATTGTGAACGATAAGAGTATAGGGAAAATCCTTAAAGCGTTGGACTCTGATGATGTTGAGTTACTAAAGCTTCTTTTAGACGAATCTAGTGTGACTCTTGACAATGCATACGCGCTACACTACGCTTGTGCTTATTGCGATTCTAAGGTCGTTCAAGAAGTTCTTACTCTAGGATTGGCTGATATTCTCCTTAAGAATCCGCGCGGATACACGGTTCTTCACGTGGCTGCACGACGAAAGGATCCATCTATTCTGTGTGCACTGTTGAAGAAAGGAGCTTGTGCATCAGAAACCACACTTGATGGACAAACTGCTCTTTCAATTTGTCAGAGATTGACGAGGCGGAAGGATTATAATGCGAAGACTGTGCAGGGTAAGGAGTCTCATAAAGACAGGCTTTGTGTTGATGTACTTGAGAGAGAAATGAGAAGAAATTCTATGTCGGTGGACATGTCGGTTTTGTCACAGTTAACTGCTGATGATTTGAATATGAGACTGGATTACCTTGAAAATAGAGTTGCATTTGCTAGGCTGTTCTTTCCTGCTGAGGCTAGGGTTGCCATAGAGAATGCTGAGGCCGATTCAACACCGCTCTACGCAACTTCATCACCTCTAAAAGGCAATATAAAAGAAGTAGATCTAAATGAAACTCCTTCTTTTAGAACAAGAAAACTCCAATTAAGATTACAATCCCTTGTAAAAACAGTTGAGAATGGTAGGCGTTTCTTTCCGCATTGTTCGGAGGTGCTAGATAAGTATCTAGAAGACGAGATGCCCGATGTTCATGTCCTAGAGAACGGAACCGAGGAAGAGCGAAGAACGAAGAAAGCACGGTTCATGGAACTTAGAGACGAGGTACAGAAGGCATTTCACAAGGATATGGCTGAAAATAACCATTCAAATTTGTCATCATTGACTTCTACAACATCCTCTTCAACAAGAAGGGAAAGTCTTAACCACAAAGTGAGGAGAAAATGA 1758 0.4056 MDNSNEASSSLSFVSSHLSNASSNTHNEHVANIEIVSLNKLSGSLEKLLSDVVDYDYCDAEIVVEDIPVGIHRCILASRSQFFHELFKKGKDGDSKEGKGKPSYQMKNLVCYGSVGYEAFVVFLHYLYTGKLKAPPTEVMTCVDEACIHDSCRPAIDYALELIYASSTFQMKELVLLFQRYLLNFVDKALVEDVIPILVAANHCQLEQLLTHCIQRVARSDMDIISLERELPYEVMTEIKSLRVQSLPESTPDAMEVEPVIVNDKSIGKILKALDSDDVELLKLLLDESSVTLDNAYALHYACAYCDSKVVQEVLTLGLADILLKNPRGYTVLHVAARRKDPSILCALLKKGACASETTLDGQTALSICQRLTRRKDYNAKTVQGKESHKDRLCVDVLEREMRRNSMSVDMSVLSQLTADDLNMRLDYLENRVAFARLFFPAEARVAIENAEADSTPLYATSSPLKGNIKEVDLNETPSFRTRKLQLRLQSLVKTVENGRRFFPHCSEVLDKYLEDEMPDVHVLENGTEEERRTKKARFMELRDEVQKAFHKDMAENNHSNLSSLTSTTSSSTRRESLNHKVRRK 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02848 585 ProSiteProfiles BTB domain profile. 58 136 IPR000210 GO:0005515
Vivi7g02848 585 MobiDBLite consensus disorder prediction 556 575 - -
Vivi7g02848 585 Gene3D - 262 402 IPR036770 -
Vivi7g02848 585 SMART ANK_2a 328 357 IPR002110 GO:0005515
Vivi7g02848 585 SMART ANK_2a 294 324 IPR002110 GO:0005515
Vivi7g02848 585 FunFam regulatory protein NPR3-like 262 402 - -
Vivi7g02848 585 Pfam Ankyrin repeats (3 copies) 276 353 IPR002110 GO:0005515
Vivi7g02848 585 SMART BTB_4 58 186 IPR000210 GO:0005515
Vivi7g02848 585 CDD BTB_POZ_NPR_plant 39 186 - -
Vivi7g02848 585 MobiDBLite consensus disorder prediction 553 585 - -
Vivi7g02848 585 ProSiteProfiles Ankyrin repeat region circular profile. 328 353 - -
Vivi7g02848 585 PANTHER REGULATORY PROTEIN NPR3 14 578 IPR044292 GO:0009862|GO:2000022|GO:2000031
Vivi7g02848 585 SUPERFAMILY Ankyrin repeat 272 371 IPR036770 -
Vivi7g02848 585 Pfam BTB/POZ domain 56 175 IPR000210 GO:0005515
Vivi7g02848 585 SUPERFAMILY POZ domain 45 184 IPR011333 -
Vivi7g02848 585 ProSiteProfiles Ankyrin repeat profile. 328 353 IPR002110 GO:0005515
Vivi7g02848 585 Pfam NPR1/NIM1 like defence protein C terminal 370 568 IPR021094 -
Vivi7g02848 585 Gene3D Potassium Channel Kv1.1; Chain A 20 218 IPR011333 -
Vivi7g02848 585 FunFam Regulatory protein NPR3 31 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02848 Vivi-Chr7 92811708 92815035 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi7g02848 NPR1_like_C 6.2e-80 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02848 K14508 - gmx:100814739 809.29