Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02788 ATGGAGTGGACGTTAGCCAAGAAGAAAGATTTTCGGGTCTTTAGTCAGAGATGGGATACTTTTCCGTTCAACGGAGTGCGCAGAATCAGGGAGGATGAATGTTTAGTCTCCATCTACTTCTCTGAAATTCAGGATCGTATTAGGGCTAAGGATGTCTTTGAGTTATTTGGGTGTCATGGAAATGTGGTGGAAGTGGTTATCCCGCCCAAGCCGAATAATTTCGGTAAGAGGTATGGTTTTGCTCGGTTTACTAACGTGGAAGACGTGCGAATGCTGGCTGTGAGGTTGGATAATATTGTGATAGACGGTAAGAAGATGCATGCCAACGTTCCAAGGTTTGAAAGGAAGAGGAGACCAGGGGGTGGTGGGGGTTCGGGAGGCTTATAG 387 0.4651 MEWTLAKKKDFRVFSQRWDTFPFNGVRRIREDECLVSIYFSEIQDRIRAKDVFELFGCHGNVVEVVIPPKPNNFGKRYGFARFTNVEDVRMLAVRLDNIVIDGKKMHANVPRFERKRRPGGGGGSGGL 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02788 128 CDD RRM_SF 38 109 - -
Vivi7g02788 128 SMART rrm1_1 37 109 IPR000504 GO:0003723
Vivi7g02788 128 Gene3D - 27 128 IPR012677 -
Vivi7g02788 128 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 113 IPR000504 GO:0003723
Vivi7g02788 128 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 107 IPR000504 GO:0003723
Vivi7g02788 128 SUPERFAMILY RNA-binding domain, RBD 27 125 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02788 Vivi-Chr7 92007090 92007476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02788 37 116 Eukaryotic Initiation Factors Gene Family AT3G16380 27.500 5.70e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02788 - - vvo:131619687 249.595