Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02778 ATGAGTTTCTTTGCATGTTGTAAATCACAAGATAAGAATGACAAGAACTCATTGAAGAAGCGTATTAAGGATTATCATAACATCTGTTTTAAATATGATAGTGGCAAAAGGAAGTACATAGTGGAAGAAATCAACAACGATGACAAAGGAAATATTACCTCTAAGATATTTTCTTACAATGAATTATGTGTTGCAACTAAGAATTTTCATACCAGCAATATGGTTGGTGAAGGAGGTTTTGGGAGGGTTTATAAAGGACGCATCAAAAGCATAGACAATAAGGTCGTTGCGGTAAAGAAACTTAATAAGGATGGATTTCAAGGAAGTAGAGAGTTTCTTGCGGAGGTTATGATTTTGAGTTTTTTGCACCACTCCAACCTTGTCAATTTGGTAGGGTATTGTTCTGAAGGTGAACAAAAGATTTTGGTATATGAATACATGGCAAATGGTTCTTTAGAAGATCACCTCTTTGAGTTACCGCAGACCAAAAAGCCTTTGGATTGGTATACTAGAATGAAAATTGCGGAAGGTGCGGCAAAAGGACTTGAATACTTACATGCGGAGGCAAATCCGCCCGTGATATACCGGGATTTCAAAGCATCCAACATATTATTAGACGAAAACTTCAATCCAAAACTCTCCGATTTTGGACTTGCAAAACTTGGTCCAACCGGTGACAAAACACATGTGTCCACTAGGGTTATGGGAACTTATGGCTATTGTGCACCTGAATATGCATCAACAGGTCAATTGACTGCAAGATCAGATGTTTACAGCTTTGGAGTTGTGTTTCTTGAGATGATCACTGGGAGACGAGTACTTGATTATTCAAGAGCATCGGAAGAACAAAACTTAATCAATTGGGCGCTACCACTCCTCAAAAACAAAAGAAAATATGCATCAATGGTTGATCCATTGTTAAAAGGGAACTATCCAACAAGAGGTTTATTACAAGCACTAGCAATTGCAGCAATGTGTCTATTGGAGGATGCAAATGCTAGACCTTTGATTGGTGATGTGGTAACAGCCCTTGGAGTTTTAGCAATGAGGCATGTACAAGTTGGTAAACAAAAAAGTACAAAAGAAACTTGTAGTGAGCAAGGAGAAGGAAGTTGGCAAATGAATTTGGTAGACTAG 1137 0.3799 MSFFACCKSQDKNDKNSLKKRIKDYHNICFKYDSGKRKYIVEEINNDDKGNITSKIFSYNELCVATKNFHTSNMVGEGGFGRVYKGRIKSIDNKVVAVKKLNKDGFQGSREFLAEVMILSFLHHSNLVNLVGYCSEGEQKILVYEYMANGSLEDHLFELPQTKKPLDWYTRMKIAEGAAKGLEYLHAEANPPVIYRDFKASNILLDENFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYASTGQLTARSDVYSFGVVFLEMITGRRVLDYSRASEEQNLINWALPLLKNKRKYASMVDPLLKGNYPTRGLLQALAIAAMCLLEDANARPLIGDVVTALGVLAMRHVQVGKQKSTKETCSEQGEGSWQMNLVD 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02778 378 CDD STKc_IRAK 75 344 - -
Vivi7g02778 378 Pfam Protein kinase domain 69 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g02778 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Vivi7g02778 378 FunFam Serine/threonine-protein kinase CDL1-like 40 146 - -
Vivi7g02778 378 Gene3D Transferase(Phosphotransferase) domain 1 147 369 - -
Vivi7g02778 378 PANTHER OS07G0668900 PROTEIN 5 356 - -
Vivi7g02778 378 Gene3D Phosphorylase Kinase; domain 1 40 146 - -
Vivi7g02778 378 ProSiteProfiles Protein kinase domain profile. 69 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g02778 378 FunFam Serine/threonine-protein kinase PBS1 147 363 - -
Vivi7g02778 378 SUPERFAMILY Protein kinase-like (PK-like) 52 344 IPR011009 -
Vivi7g02778 378 MobiDBLite consensus disorder prediction 358 378 - -
Vivi7g02778 378 ProSitePatterns Protein kinases ATP-binding region signature. 75 100 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02778 Vivi-Chr7 91935454 91937836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02778 45 348 Glycoside Hydrolase AT3G07070 61.889 3.63e-144 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vivi7g02778 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02778 - - gmx:100798032 583.948