Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02749 ATGGTTATAAATATGTACTTACACACACTCATCTTAAGGCAACACATCTACATCATTCTTAATTATCTTCTCAATTTGAATATGGCTATTATCATTACTTCACCAACTATCACTAACTGGTTTTATGGAACAATTGAAGTTCTTTCTTTCAAGGTTTTGACTGTCATTGGCTATTCTGCATTTGAGAAATTCATGAGAGTTATGGAGAGAATTCTCTTTGCTGTATTCACTTGTGTTCTAGCACTAGGAGGATCAATAATAGGAACAATAGCAGGAGGTATCAAAGGCCAAACCACAGAAGCTGGATTTCTTGATGGAGCTTGCAAAGGAGCTATTGCAGGAGCCATTGCAGCTATAGAGTTGATGAGTTTTGGTTCTGTTGGTGAGCCACTTTCCAAGGTTGCTTTGTTGACAAGTTTATTGAATGGAAAAGTGTTTATGGAATGGATATGTCCAACTGCTGCACAAGCTTATATAAATTCAGTAGAAGCAGCTTATGGAGGAATGGTTTCAGATATTTATGACAGCATGGGAGTTAAAGGGATGTCACAAACTTGTATTATGAATCTTCCATTTCATAAATTTAACTCCTCCAACAAAATCATGAAATTATACAATGAATCATGCTGCTCCATTTGCTTCCAGGATTTAGAGGATGGAGAATTGGTGAGAATGCTTCCAAAATGTAGTCACATTTATCATTTAGAATGCATTGACAAGTGGCTAGTACAACAAGGATCGTGTCCTATTTGTAGAACTTATATTCTGGAATAG 774 0.3618 MVINMYLHTLILRQHIYIILNYLLNLNMAIIITSPTITNWFYGTIEVLSFKVLTVIGYSAFEKFMRVMERILFAVFTCVLALGGSIIGTIAGGIKGQTTEAGFLDGACKGAIAGAIAAIELMSFGSVGEPLSKVALLTSLLNGKVFMEWICPTAAQAYINSVEAAYGGMVSDIYDSMGVKGMSQTCIMNLPFHKFNSSNKIMKLYNESCCSICFQDLEDGELVRMLPKCSHIYHLECIDKWLVQQGSCPICRTYILE 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02749 257 SMART ring_2 210 251 IPR001841 -
Vivi7g02749 257 Pfam Ring finger domain 210 252 IPR001841 -
Vivi7g02749 257 CDD RING-H2_EL5-like 209 252 - -
Vivi7g02749 257 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 64 253 IPR044523 -
Vivi7g02749 257 ProSiteProfiles Zinc finger RING-type profile. 210 252 IPR001841 -
Vivi7g02749 257 SUPERFAMILY RING/U-box 203 255 - -
Vivi7g02749 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 255 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02749 Vivi-Chr7 91533394 91534728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02749 67 255 C3H Transcription Factor Family AT5G66070 34.653 1.17e-36 127