Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02748 ATGGCTATTATCATTACTTCACCAACTATTACTAACTGGTTTTGTGGAACAATTGAAGCTCTTTCTTCCAAGGTTTTGAATGTCATTGGTTGTTCTGCATTTGAGAAATTCATGAAAGTTATGGACAGAATTCTCTTTGCTGTATTCGCTTGTTTTCTAGCATTAGGAGGTTCAATAATAGGAACAATAGGAGGAGCTATCAAAGGCCAAACCACAGAAACTGGTTTTCTTGATGGAGCTTGCAGAGGAGCAATTGCAGGAGCCATTGCAGCCATAGAGTTTACGAGTTTAGCTTCTGTTGGTGAGCCATTTTCCAAGGTAGCTTTATTGACAAGTTTATTAAATGGAAAAGTGTTTATGGACTGGATATGTCCAACTGCTGCACAAGCTTATATAAATTCAGTAGAAGCAGCTTATGGAGGAGTGGTTTCAGATATTTATGACAGCATGGGAGTTAAAGGGATGTCACAAACTTGTATCATGAAACTTCCATTTCATAAATTTAACTCCTCCAACAAAATTATGAAATTATACAATGAATCATGCTGCTCCATTTGCTTCCAGGATTTAGAGGATGGAGAATTGGTGAGAATACTTCCAAAATGTAGTCACATTTATCATTTAGAATGCATTGACAAGTGGCTAATACAGCAAGGATCGTGTCCTATTTGTAGAACTTACATTCTTCAATAG 693 0.368 MAIIITSPTITNWFCGTIEALSSKVLNVIGCSAFEKFMKVMDRILFAVFACFLALGGSIIGTIGGAIKGQTTETGFLDGACRGAIAGAIAAIEFTSLASVGEPFSKVALLTSLLNGKVFMDWICPTAAQAYINSVEAAYGGVVSDIYDSMGVKGMSQTCIMKLPFHKFNSSNKIMKLYNESCCSICFQDLEDGELVRILPKCSHIYHLECIDKWLIQQGSCPICRTYILQ 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02748 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 229 IPR013083 -
Vivi7g02748 230 Pfam Ring finger domain 183 225 IPR001841 -
Vivi7g02748 230 SUPERFAMILY RING/U-box 176 228 - -
Vivi7g02748 230 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 31 226 IPR044523 -
Vivi7g02748 230 ProSiteProfiles Zinc finger RING-type profile. 183 225 IPR001841 -
Vivi7g02748 230 SMART ring_2 183 224 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02748 Vivi-Chr7 91504641 91505950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02748 24 228 C3H Transcription Factor Family AT5G66070 33.486 2.23e-36 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02748 - K19041 mtr:11435458 323.168