LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi7g02686	ATGGACGAGGCTTCGGAACCGACGGTAGATCCTCCACCGTTGGTCGAGAACGGAGGAGGAGAACCATCGGAGGAACCGTGTAGCAAGAAGGCCAAGGTTGACGAAGTTGATAAACCTGAGGCGGAATTGAAACGTGTGGCGGAGATTGTTTTGGTTTTATCGACGATGGCGACGATGCGAGGTGGAGAGAAGCCGACTGATGTGGAGGTTGAGCTCATGAGAGAGGCGCGGAGTAAGCTCGCAATTCTCTGCCAAGGGATTGCTCCCAAGGATATTGTTGCTCGTGAAGCTGTTGGTGCCGTTATTGAGGATCTCGGTTTGAATGCTAAGGTTGGGGACCAGAGGTTAGGGTTTCGTGCTCCGAAGATGTCCATTGCCGAGAAGTATGCGTTCAATAAGTCGAAGATGGAGGAATCAAAGAAATTATTATCTGCATCTTCTACAACATATACATCTCAACCCTTGCAAACAAACACTGGTGGGATGGTTGACAATCGTGTTCCAACTAATGCTGTTCGAATGTTCTCGTCTGATAAAACAAACCACCCAGCAATGACTTCTACAGTTCCAATGGCGTCTATTCCTTCTCATCTTTCTGCAGGATCTTCTGCAGCATTGCAATATCAATCAACCAGCAATGAAGTCAGACCGCCCATTGTTTCTGGTGTAATGCCTAGCAGTCACATGGGGAGAAATCCATCTTCCGTAGCATTGCCTAGAGTTGAAAACCCACAGTTTAAAGTTACTGGAGGATTGAGTGGGGCTCCTTATGTGCTTCAGGTCCAAGCAAATTCATTGGCAAACCAATCATTGGTGAATGCTCCTACATGGTCAATACAGACTCAACCTGTGTCTTTAGCTAGAAGTGTATCAGAAAACAAGGCGCCTGCTCATAATCCTCCCAAGGTGGAAGGAACTGCTGATGCAACTTCATCGAGGGCAGGTCCACAAGTAGCAACAGGTCAGAGCATTAGACCTTTTATTACTCAAACGGGGCCTGGAAATATGTCTAGTATGCACCAGCCATTGCAGGGTGGGAACATGGTTCACCCTCCTTTGATTCCTAGTCACTCTGATATTGCAAAGATTGTCCAGAAATTGTTACTACCAAAGCTTCCTGAACATCGCACATGGACTCCTCCGTCAAGGGATTATATGAATAAGGCTTTCACATGTCAGACATGTGAGCTCACTGTCAGTGAGGTTGACTCTGTTCTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTAAAGTGCCTGCAGCCATCAGTAATTAGAGGAATTCATAATAGAGTTGATTGGCACTGCGCAAGATGCTTGAGTTTAAGTGGCGGAAAGTCTTTGCCTCCAAAATATGGCCGTGTGACGAGATCTTCAATTACATCACCAAGTTTTCCCTCTAATACAGTTGGTATTCAACCATCTTCAGAGAAGAAAGCAGATAACTTAGATCTAAAGGTCAGCCCGCAAATTTTTACAGCAAATGGAAACTCTGTTCCAACTGTTTCCAGTGCCAGTCACAGTACTGAGCGGTCATTTGACTCAAATACCCCAGATACAAGAGATATGCAAGGTTCCAACATTTCATCTAGCATTGAAACCATTGAAGAGAAGCCTGATCCAAGCATATTAATGAAATCTGCAGCTTGTAGTGTTTCCACTGGCTTGCAGGGTGAAAGTCATGCTGAACAAATAGATTCAAAGGCTTTGACCTGTAAAGATACTTCTGAATCAGAAACTCTTCCTAAATTATCCGAGCCGGCTAAATGTGAAAATTTGCAATCATCACAAGATTCTCAAGTTGAGATGGCAGTGCCACAGGACAATGCTGAAACATCGCCAGATAGACATGATAGCAATAGTTTTATGATTAGTAATCAAATGGAATGTGATGGAGGAGAGAATATAACTTACGATATCAAGCACGATGATCTAGATGTTGCACAACCAGTTTCTGTCAAAAGTTCTGGAACTAATACTGGAGGTATTCAGCACTCTGCTTTATCTTCAGATAGCTCACATGCTGTAGAATGGATTGGTGATGATGTACAACTTGTAGATGAGAAAAAGTATTACCAATCTTGCTGCATTGATGGAGTAACATATAGGCTGCAAGGCCATGCTTTTTTCACATCCAACCACGGCAAACTGACACCTTCTAAACTTCAGTCTATGTGGGAAGATTCCGAAACTGGGATGAAGTGGGTAAAGGCAACGAAGTGCTACTTTCCTGATGACTTGCCAGGAAATATTGGTCATCCTTGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAGTTGAAATGGCTAGCTCTATCCGAGGCCCTTGTGTAGTCCTTCCATACGATAAATTTAAACAAGAAAATGACAGAAGATCTCAATTTGGAACTGAGGCAAGTGTTAGTGTACAGCCCATTTTCCTTTGCAGGTGGTTTTATGATGAAATCAAAAAGTCATTTCAACCCGTTATTAGTTGA	2487	0.4331	MDEASEPTVDPPPLVENGGGEPSEEPCSKKAKVDEVDKPEAELKRVAEIVLVLSTMATMRGGEKPTDVEVELMREARSKLAILCQGIAPKDIVAREAVGAVIEDLGLNAKVGDQRLGFRAPKMSIAEKYAFNKSKMEESKKLLSASSTTYTSQPLQTNTGGMVDNRVPTNAVRMFSSDKTNHPAMTSTVPMASIPSHLSAGSSAALQYQSTSNEVRPPIVSGVMPSSHMGRNPSSVALPRVENPQFKVTGGLSGAPYVLQVQANSLANQSLVNAPTWSIQTQPVSLARSVSENKAPAHNPPKVEGTADATSSRAGPQVATGQSIRPFITQTGPGNMSSMHQPLQGGNMVHPPLIPSHSDIAKIVQKLLLPKLPEHRTWTPPSRDYMNKAFTCQTCELTVSEVDSVLLCDACEKGFHLKCLQPSVIRGIHNRVDWHCARCLSLSGGKSLPPKYGRVTRSSITSPSFPSNTVGIQPSSEKKADNLDLKVSPQIFTANGNSVPTVSSASHSTERSFDSNTPDTRDMQGSNISSSIETIEEKPDPSILMKSAACSVSTGLQGESHAEQIDSKALTCKDTSESETLPKLSEPAKCENLQSSQDSQVEMAVPQDNAETSPDRHDSNSFMISNQMECDGGENITYDIKHDDLDVAQPVSVKSSGTNTGGIQHSALSSDSSHAVEWIGDDVQLVDEKKYYQSCCIDGVTYRLQGHAFFTSNHGKLTPSKLQSMWEDSETGMKWVKATKCYFPDDLPGNIGHPCISEVNEVYESNSDRVEMASSIRGPCVVLPYDKFKQENDRRSQFGTEASVSVQPIFLCRWFYDEIKKSFQPVIS	828

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi7g02686	828	Gene3D	-	679	827	IPR043151	-
	Vivi7g02686	828	MobiDBLite	consensus disorder prediction	1	37	-	-
	Vivi7g02686	828	MobiDBLite	consensus disorder prediction	288	320	-	-
	Vivi7g02686	828	CDD	BAH	699	826	-	-
	Vivi7g02686	828	MobiDBLite	consensus disorder prediction	496	527	-	-
	Vivi7g02686	828	Pfam	PHD-finger	392	440	IPR019787	-
	Vivi7g02686	828	SUPERFAMILY	FYVE/PHD zinc finger	383	443	IPR011011	-
	Vivi7g02686	828	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	334	440	IPR013083	-
	Vivi7g02686	828	PANTHER	RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN	2	826	-	-
	Vivi7g02686	828	MobiDBLite	consensus disorder prediction	578	621	-	-
	Vivi7g02686	828	ProSiteProfiles	BAH domain profile.	700	827	IPR001025	GO:0003682
	Vivi7g02686	828	MobiDBLite	consensus disorder prediction	589	607	-	-
	Vivi7g02686	828	MobiDBLite	consensus disorder prediction	23	37	-	-
	Vivi7g02686	828	ProSitePatterns	Zinc finger PHD-type signature.	392	439	IPR019786	-
	Vivi7g02686	828	MobiDBLite	consensus disorder prediction	454	476	-	-
	Vivi7g02686	828	ProSiteProfiles	Zinc finger PHD-type profile.	389	442	IPR019787	-
	Vivi7g02686	828	MobiDBLite	consensus disorder prediction	451	480	-	-
	Vivi7g02686	828	SMART	PHD_3	391	440	IPR001965	-

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	PHD	Vivi7g02686		PHD	2.2e-07	CL0390

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi7g02686	-		-	gmx:100807139	1154.04

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi7g02686	7	90802037	90809030	Vivi7g02686	7	90802037	90809030	ECH