Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02568 ATGGCTGATTCAGACAACGAGTCAGGAGGAGCCCCGAACGCCGGTAACAGCGAGCTATCACCTCGCGAGCAAGACCGATTCCTACCGATAGCGAACGTGAGTAGAATCATGAAGAAAGCGTTACCTGCAAACGCGAAGATCTCGAAAGACGCGAAAGAAACCGTTCAAGAATGCGTCTCGGAGTTCATAAGCTTCATCACCGGCGAAGCCTCCGATAAGTGTCAGCGAGAGAAACGGAAGACGATCAACGGCGACGATCTGCTCTGGGCGATGACTACGTTAGGGTTCGAAGAGTACGTTGAACCGTTGAAGATTTATCTTCAACGATTCAGAGAGATCGAAGGTGAGAAAACCGTTGCGGCACGTGACAAGGACGTGGCTCCCTCTTCTTCTTCATCTTCGGTTTTCGAATATGGTGCTCCTCAAATGATCATGCAGCATCAGCATCATCATCAGCAACAGCAGCATCAGGGACACGTGTACGGTTCTGGTAGTTACCATCAGGTGCCTGGTGGGGCCGGTTATCCTGGTGCTGGATCTAATGCGGGTAGACCCAGGTAG 561 0.5152 MADSDNESGGAPNAGNSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQRFREIEGEKTVAARDKDVAPSSSSSSVFEYGAPQMIMQHQHHHQQQQHQGHVYGSGSYHQVPGGAGYPGAGSNAGRPR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02568 186 Gene3D Histone, subunit A 16 160 IPR009072 GO:0046982
Vivi7g02568 186 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Vivi7g02568 186 SUPERFAMILY Histone-fold 24 136 IPR009072 GO:0046982
Vivi7g02568 186 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vivi7g02568 186 MobiDBLite consensus disorder prediction 146 162 - -
Vivi7g02568 186 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vivi7g02568 186 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Vivi7g02568 186 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Vivi7g02568 186 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Vivi7g02568 186 FunFam Nuclear transcription factor Y subunit B-3 16 138 - -
Vivi7g02568 186 MobiDBLite consensus disorder prediction 145 186 - -
Vivi7g02568 186 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02568 Vivi-Chr7 89612320 89613196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02568 1 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.777 2.12e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi7g02568 CBFD_NFYB_HMF 1.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02568 K08065 - gmx:100813169 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g02568 7 89612320 89613196 Vivi7g02568 7 89612320 89613196 ECH
Vivi3g05243 3 106091599 106092785 Vivi7g02568 7 89612320 89613196 PCT