Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02466 ATGTCTGTGAATGGAAGAGTTTCTGGTTCAAATGGAAGATTGTCACAGAAAATCAAATCTAGGAAAGGAAATGAGTCTTCTTTACTTGTGTCTAATTCTACTTGGACGTGTTTGTGGAAACAGTTTCTCTTTTGGGTTTTTGTTGCTATAGGGAGTGTTTGGTTTATCTTTAATAGTTTCAATTATAAGCCTTTGACTAATGAAGCAGCTTGTGAAAAAAGTACACAAGACTTGTTACAACGTTACAATGTCAGTAGAGAGCAGCTTCATGCTTTGGCTTCCTTGTTCTCTGGATCAGATCAGATTTTGTCCAACTGTATTGATGAAAAAAGGCTTCAAATACTGTTAAGCAGTGGCATAGTCAATACTCCACATTCAATTTGTCCGAAGGAGAGTAGATGTGTTGAAGAGTCTCTAGAACAATGCCCGGTTCGTGATGATTTCGTTGAGGCAAGGACTGGATTACCATTCTCATACCCGTGGAAAACATACGTGACATTGGATTTTGCGCCGTGGTCCAAGTTGGTTAATGTTTTGCTCTGTGGGATTGTTATTGTAATTATAATGTCGCTCAAGTTGTCTGGCTTCTGTTTAATAAGTAGGAGTCGAAGGGAGAAGCTAGGTCAAGATAATTCTACTGGTCAACACAAGCCGCTTCAACATTTGATGCATGGTCATTCGAAGGCTTCTGGGAGGTGGAGGAAAAAGTTGCTAGATATTTTCGTCTCACTTGGAATTGTCGGTTCCGTGTGGCTATTTTGGTACCTGAGTTCCGACATTGTGCAAAGAAGAGAAGAAATGCTTGCCACTATGTGTGATGAACGAGCTGGTATGCTGCAAGATCAATTTAACGTGAGCTTGAACCATGTTCACGCTCTCGCTATTCTTGTGTCTACGTTTCATCATGGTAAACATCCTTCTGCAGTTGACCAGAATATTTTCGGAGAATATACCGAGAGTTCCGCGTTTGAGAGACCACTTACTAGTGGCGTTGCTTATGCTTTGAAAGTTCTGCATTCAGATAGGATGAATTTTGAGAAGCAGCATGGGTGGACAATTAAGAAAATGGAAACCGAGAACGAGGCATTAGTTCAAGATTGTATTCCAGAAAACTTGGATCCGGCGCCCATTCAAGATGAATATGCACCGGTCATATTTGCTCAAGAAACTGTTTCTCATATTGTATCTATTGACATGATGTCAGGGAAGGAAGATCGGGAGAATATTTTGCGAGCAAGGGCTTCCGGAAAGGGTGTTCTGACATCCCCTTTCAAGCTTCTAAAGTCTAACCACCTAGGCGTTGTGCTTACATTTGCTGTCTATGGCTCTAAGCTTCCTCCAGATGCTACACCCGAACAGCGTATCGAAGCTACTGTCGGGTATTTGGGCGCATCTTATGATGTTCCATCACTTGTGGACAAGCTTCTTCACCAACTTGCCAGCAAGCAAACCATTGTTGTTAATGTTTATGACACAACTAATGCATCTGCGTATATTACAATGTATGGTACCGATGTTGTTGATACTGGCCTACTACACGTAAGCGGTCTAGATTTTGGGGATCCGCTACGAAAACATGAGATGCATTGCAGGTTCAAGCATATGCCTCCATTTCCTTGGATGGCATTCAATGCATCTGTGGCGGTATTTGTTATTACCTTGCTTCTTGGACATATATTTCATGCGGCAATAAATCGAATAGCTCAAGTAGAGGATGACTATCGTCGGATGAAAGAGCTCATGGTTCGCGCTGAGGCTGCAGATGTCGCAAAATCTCAGTTTCTTGCGACAGTTTCGCATGAGATCAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGATACTGACCTCGATGACAATCAGATCGATTGTGCCCAAACTGCTCATGACAGTGGTAAAGATCTTATATCGGTCATAAGTGAGGTTCTTGAACAAGCTAAGATCGAAGCAGGAAGACTTGAACTCGAATCTGTAGCTTTTCATCCACATGCTATTCTCGATGAAGTTCTATCACATTTCTCTGAAAAAGCCATTGAAAAACGAATTGAGTTGGCTGTTTACGCGTCCAACCAAGTACCTCAGGTTGTCATCGGCGATCCTAAACGCTTCCGGCAAATAATTACCAATCTTGTCGGAAACTCACTTAAGTTCACTCACGATAAAGGACATGTTTTTGTGTCGATTCATCTTTCAAACGAAGTGAAGAATCCACTTCATATCATGGATCCAGTGCTGAGAGAAGGCTTAAACACGAGCCACGATATATCAGAAGGATCATGTAACACGTTGAGTGGATTTCCTGTAGGCAACAGATGGAAAAGCTGGGAAAATTTTAAGAAGTTAAATTTGGCGGATGAATCTGAAACTATTCAACTACTAGTAACGGTTGAGGACACTGGTATCGGAATTCCTACCGATGCACAAAGCCGCATATTTACACCTTTTATGCAGGCTGATAGTTCTACATCTCGAACATACGGTGGAACTGGAATAGGATTGAGCATTAGTAAATGTCTAGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGTGAGCCTGAAATCGGAAGTACTTTTTCGTTTACTGGAAATTTCAGAAAAGGAGTAACCGAATCTCGGGATGATAAGTTGCAGAAGAACAATCCCGAGTTTCAAGGATTGAAAGCATTAGTAGTAGATAGAAGAAAAGTTCGAGCCGAGGTTACACGATATCACCTACAGAGGTTAGGGATGTGTGTGGATGTAAAATTCCATCTATCCGAAACTTGCAACTCAAGTATGTCAGTACAGTTGGCCATGATTCTTATAGAGAAGGATTCTTGGGACAAGGAAAGTAGTAGCTTATTTGAAATCAAGAAACACGAACACAATGGCATCAAAGAGGACCCGTTAAAATTTTCAAAGATTTTTCTCCTGTCCGCCCATCTAAGCTTCAGCGAACGCAACGAGCTAAAGTCAGTTGGTATCATAGATGATATACTAATGAAGCCTCTTTGGCTAAATGCTTTGATTCGATACTACAGGTCATCGTCCGGAGCTGGGAGAAAGCAAATCACTAGAAAGAAATTATCCAAACTTGGAAATTTATTAACACACAAACGAATTTTGGTGGTTGATGATAATGCGGTGAACCGAAAAGTTGCAGAAGGTGTTCTGCGAAAATACGGAGCAGTAGTAACCTGTGTTGAGGGCGGTAAGGTTGCTCTAAAGATGCTTAAACCACCGCATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGTTTTGAGGTGACGAGGCAAATCCGGTATATGGAGAACGAGGTAAATGAAAAACTCGCTCGCGGGCAAGCATCGGCAGAGACTTTTGGCAACAATTCTCATTGGCACACTCCAATATTAGCTATGACAGCTCATGTAACTCCGGCATCAAATGAAGAATGCAAAAAATGTGGGATGGACGACTACGTGTCAAAGCCATTCGAAGAAGAGCAACTCTATATGGCAGTCGCACGCGTCTTCAATTTCGGGTCATAG 3540 0.4178 MSVNGRVSGSNGRLSQKIKSRKGNESSLLVSNSTWTCLWKQFLFWVFVAIGSVWFIFNSFNYKPLTNEAACEKSTQDLLQRYNVSREQLHALASLFSGSDQILSNCIDEKRLQILLSSGIVNTPHSICPKESRCVEESLEQCPVRDDFVEARTGLPFSYPWKTYVTLDFAPWSKLVNVLLCGIVIVIIMSLKLSGFCLISRSRREKLGQDNSTGQHKPLQHLMHGHSKASGRWRKKLLDIFVSLGIVGSVWLFWYLSSDIVQRREEMLATMCDERAGMLQDQFNVSLNHVHALAILVSTFHHGKHPSAVDQNIFGEYTESSAFERPLTSGVAYALKVLHSDRMNFEKQHGWTIKKMETENEALVQDCIPENLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYGSKLPPDATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAYITMYGTDVVDTGLLHVSGLDFGDPLRKHEMHCRFKHMPPFPWMAFNASVAVFVITLLLGHIFHAAINRIAQVEDDYRRMKELMVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDDNQIDCAQTAHDSGKDLISVISEVLEQAKIEAGRLELESVAFHPHAILDEVLSHFSEKAIEKRIELAVYASNQVPQVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSIHLSNEVKNPLHIMDPVLREGLNTSHDISEGSCNTLSGFPVGNRWKSWENFKKLNLADESETIQLLVTVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPEIGSTFSFTGNFRKGVTESRDDKLQKNNPEFQGLKALVVDRRKVRAEVTRYHLQRLGMCVDVKFHLSETCNSSMSVQLAMILIEKDSWDKESSSLFEIKKHEHNGIKEDPLKFSKIFLLSAHLSFSERNELKSVGIIDDILMKPLWLNALIRYYRSSSGAGRKQITRKKLSKLGNLLTHKRILVVDDNAVNRKVAEGVLRKYGAVVTCVEGGKVALKMLKPPHNFDACFMDLQMPEMDGFEVTRQIRYMENEVNEKLARGQASAETFGNNSHWHTPILAMTAHVTPASNEECKKCGMDDYVSKPFEEEQLYMAVARVFNFGS 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02466 1179 SMART CHASE_2 305 504 IPR006189 -
Vivi7g02466 1179 SMART HKATPase_4 702 871 IPR003594 -
Vivi7g02466 1179 SMART REC_2 1037 1171 IPR001789 GO:0000160
Vivi7g02466 1179 CDD HisKA 590 651 IPR003661 GO:0000155|GO:0007165
Vivi7g02466 1179 PRINTS Bacterial sensor protein C-terminal signature 796 810 IPR004358 GO:0016310|GO:0016772
Vivi7g02466 1179 PRINTS Bacterial sensor protein C-terminal signature 814 824 IPR004358 GO:0016310|GO:0016772
Vivi7g02466 1179 PRINTS Bacterial sensor protein C-terminal signature 831 849 IPR004358 GO:0016310|GO:0016772
Vivi7g02466 1179 ProSiteProfiles Histidine kinase domain profile. 597 871 IPR005467 -
Vivi7g02466 1179 Pfam Response regulator receiver domain 1039 1171 IPR001789 GO:0000160
Vivi7g02466 1179 CDD REC_hyHK_CKI1_RcsC-like 1039 1171 - -
Vivi7g02466 1179 ProSiteProfiles Response regulatory domain profile. 1038 1175 IPR001789 GO:0000160
Vivi7g02466 1179 Gene3D CHASE domain 309 535 IPR042240 -
Vivi7g02466 1179 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 576 656 IPR036097 GO:0000155|GO:0007165
Vivi7g02466 1179 SUPERFAMILY CheY-like 887 1011 IPR011006 -
Vivi7g02466 1179 Pfam His Kinase A (phospho-acceptor) domain 590 655 IPR003661 GO:0000155|GO:0007165
Vivi7g02466 1179 CDD HATPase_EvgS-ArcB-TorS-like 707 866 - -
Vivi7g02466 1179 Gene3D - 1032 1177 - -
Vivi7g02466 1179 FunFam Histidine kinase 4 309 536 - -
Vivi7g02466 1179 Pfam CHASE domain 308 502 IPR006189 -
Vivi7g02466 1179 Gene3D - 654 871 IPR036890 -
Vivi7g02466 1179 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 645 866 IPR036890 -
Vivi7g02466 1179 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 702 866 IPR003594 -
Vivi7g02466 1179 Gene3D - 256 308 - -
Vivi7g02466 1179 ProSiteProfiles CHASE domain profile. 305 529 IPR006189 -
Vivi7g02466 1179 Gene3D - 558 653 - -
Vivi7g02466 1179 PANTHER TWO-COMPONENT HISTIDINE KINASE 239 1168 - -
Vivi7g02466 1179 SMART HisKA_10 590 655 IPR003661 GO:0000155|GO:0007165
Vivi7g02466 1179 FunFam Histidine kinase 4 562 653 - -
Vivi7g02466 1179 SUPERFAMILY CheY-like 1035 1176 IPR011006 -
Vivi7g02466 1179 Coils Coil 567 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02466 Vivi-Chr7 88525158 88530501 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02466 70 1175 Miscellaneous Gene Families AT5G35750 59.139 0.0 1283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi7g02466 CHASE 1.6e-32 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02466 K14489 - gmx:100805107 1705.26