Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02455 ATGCAATCAGATAGTGGCAAGTTATTTATCGGTGGAATATCGTGGGACACCAACGAAGAGCGACTCAGGGAGTATTTTAGTACTTATGGGGAGGTTAAGGAAGCTGTGATCATGAAGGATCGGACAACTGGGAGAGCACGTGGATTTGGTTTTGTTGTTTTCATTGATCCGGCTGTTGCAGATATTGTTATTCAGGAGAAGCACAACATCGATGGAAGGATGGTTGAGGCGAAGAAAGCTGTTCCTAGAGATGATCAAAACGTACTGAGTAGAACCAGTGGCAGCATCCAAGGTTCTCCCGGTCAAGGTCGCACGAGAAAGATATTTGTTGGAGGCTTAGCTTCTACAGTGACAGAGAGTGACTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTAATGTACGATCACAACACTCAGAGGCCAAGAGGATTTGGGTTTATCACATACGATTCTGAAGAAGCTGTTGACCAGGTCCTACTTAAGACATTTCATGAATTGAACGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCTGGACCTACCCGCTCACCTCTCAGCGGATACAACTATGGTCTGAGTAGGGTTAATAGTTTCTTGAATGGCTTCAGTCAGGGGTATAGTCCGAGTGCTGTCGGAGGCTATGGACTTCAGATGGACGGTAGGTTCAGTCCGGTTGCTAGTGCTAGGAATGCATTTGCACCATTTGGCTCTGGTTATGGAATGGGTATGAATTTTGAGCCTGGTTTGAGTCCTGGATTTCGAGGGAATGCAAATTTCAATGGCAATCTTAGCTATGGGCGGGGCTTGAATCCGTACTTTATCGGAAACTCCAATAGGTTTGGCAATCCTGTTGGATATGAAAGTGGTAACGGAGGAAATAATTCTTTCTTCAGTTCCGTGACTCGGAATTTGTGGGGAAATGGAAGCCTTAACTACGGGACAAATTCTGCGAATTCCAATGCATACATTGGATCGGGAAGTGGAAATGTTGGAGGAAATGCATTTGGCAATACTGGAGTCAACTGGGGTTCTTCGCCGATATCTGGACACGGGGGAGGGAACAATGTGTCACCGGGTAGTGGCAACCTCGGATACGGAGGTGGCAACAACGGTTACGGATTGGGGACTGAAGGGTATGGAAGAAGCAGCGGTTCCTCTCTTGCACCAACATCTTCATACTCTACATCAAATGGTGGTGTTGATGGTTCTTTTGGTGATTTTTACAGCAATAGTTCGGTCTACGGGGACTCCACATGGCGATCTGCAAATTCTGAGCGAGATGGACCTGGCCCCTTCGGTTATGGACTCGGTGGTGCAGCTTCAGATGTTTCTGTCAAGACTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAAAGGCAGCCAAATAGGGGAATTACTACATAG 1437 0.4607 MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVIQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIQGSPGQGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPTRSPLSGYNYGLSRVNSFLNGFSQGYSPSAVGGYGLQMDGRFSPVASARNAFAPFGSGYGMGMNFEPGLSPGFRGNANFNGNLSYGRGLNPYFIGNSNRFGNPVGYESGNGGNNSFFSSVTRNLWGNGSLNYGTNSANSNAYIGSGSGNVGGNAFGNTGVNWGSSPISGHGGGNNVSPGSGNLGYGGGNNGYGLGTEGYGRSSGSSLAPTSSYSTSNGGVDGSFGDFYSNSSVYGDSTWRSANSERDGPGPFGYGLGGAASDVSVKTSPGYVGGYTVNKRQPNRGITT 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02455 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Vivi7g02455 478 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Vivi7g02455 478 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Vivi7g02455 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Vivi7g02455 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Vivi7g02455 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Vivi7g02455 478 Gene3D - 4 88 IPR012677 -
Vivi7g02455 478 CDD RRM2_Hrp1p 107 184 - -
Vivi7g02455 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Vivi7g02455 478 Gene3D - 103 189 IPR012677 -
Vivi7g02455 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Vivi7g02455 478 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 474 - -
Vivi7g02455 478 SMART rrm1_1 7 78 IPR000504 GO:0003723
Vivi7g02455 478 SMART rrm1_1 107 179 IPR000504 GO:0003723
Vivi7g02455 478 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02455 Vivi-Chr7 88405822 88410189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02455 8 268 Eukaryotic Initiation Factors Gene Family AT1G71770 29.085 5.43e-17 82.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g02455 7 88405822 88410189 Vivi7g02455 7 88405822 88410189 ECH
Vivi3g03620 3 61121756 61125470 Vivi7g02455 7 88405822 88410189 PCT