Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02453 ATGATCGCCGCAATTTCATGGATTCCCAAAGGAGTCTTCAAAGCCGAACCTGTTTTCGCCGAGCTTCCTTCCAAAGAGGAAATCGAAAAAATCATCTCCAACACTGTGGATGAAGAGAATGATATGGAAGAAGACACTGACAAAAACAACGATGAAGTCGCACACGCTTTAACAGTAGCTGATGCAATTGCTAAACCATCCAAGGAAAATACTGACGAAATTACCCTCGCCTTGCAAGAGCTCAACATGGAAACCTATGATGAAGAAGATGACAAAGGTTTTGAGTTGTTCAGTTCAGATCTTTATTATCAGAGTAATGAAATGGATCCATATATCAAAGATAAGAAAGAAGAGTATGATTCTGAAGATCTTGAAGACATGGTTATTAATCCAACTGATTCTGTTGTTGTATGCGCACGTACCGAAGACGATGTCAATTTCCTCGAAGTTTGGATACTTGAAGATGCCAATACCCGTGATATGAACTTGTATATTCACCATGATATCATTATTCCGGAATTTCCACTCTGCACGGCTTGGCTGGATTGTCCCCTTAAAGGAGGAGAAAAAGGAAACTTCTTGGCTGTTGGTTCAATGGGACCATCCATAGAAATTTGGGATCTTGATGTTATTGATGAGGTAGAACCATGTGTGGCGTTGGGTGGCATAGAGTCAAGCAAAACGGGGAAAAATGGGAAAAAGAAATCAATAAAATACAGAGAGGACAGTCACACTAGCTCAGTACTTGGTCTTGCTTGGAACAAGGAGTTCAGAAATCTACTTGCAAGTGCTAGTGCTGACAAGAGCGTAAAAATTTGGGACGTCGTCGCTGGAAAGTGTACTCTTACAATGGAGCATCACACTGACAAGGTTCAAGCAGTTGCTTGGAATCATCATAGACAACATGTTCTTCTTAGTGGCTCATTTGATCATACAGTTACCTTGAAGGATGTAAGGAATCCGTCGCATTCAGGCTGTACGTGGTCAGTCGGTGCTGATGTAGAGAGCTTGGCATGGGATCCACACGCTGAGAACCTTTTTGCGGTGAGTCTTGAAGATGGTACAATCAAGTGTTATGATGTCCGGAATGCCATGTCCAATGCCACATCTGAGCAGAGTGCTACTTTTACACTTCATGCACACGACAAATCTGTTACCTCACTAGCCTATAATATGTCAGCACCTAATCTTCTTGCTACCGGATCCACGGATAAAACGGTAAAACTATGGGATTTGTCCAACAACCAACCATCTTGTGTCGCAACCAAAGAACCAAAAGCTGGGTCTGTCTTTTCTATCTCTTTTGCAGAGGACAATCCATTCTTGTTGGCAATAGGAGGCTCAAAGGGAAAAATAGAATTATGGGACACCTTAGCTCACGAAGGTGTCTCTCGAAGATACGAGAAATACAGCAGGAACCAACCTCAATCCGGGGCCTGA 1440 0.4264 MIAAISWIPKGVFKAEPVFAELPSKEEIEKIISNTVDEENDMEEDTDKNNDEVAHALTVADAIAKPSKENTDEITLALQELNMETYDEEDDKGFELFSSDLYYQSNEMDPYIKDKKEEYDSEDLEDMVINPTDSVVVCARTEDDVNFLEVWILEDANTRDMNLYIHHDIIIPEFPLCTAWLDCPLKGGEKGNFLAVGSMGPSIEIWDLDVIDEVEPCVALGGIESSKTGKNGKKKSIKYREDSHTSSVLGLAWNKEFRNLLASASADKSVKIWDVVAGKCTLTMEHHTDKVQAVAWNHHRQHVLLSGSFDHTVTLKDVRNPSHSGCTWSVGADVESLAWDPHAENLFAVSLEDGTIKCYDVRNAMSNATSEQSATFTLHAHDKSVTSLAYNMSAPNLLATGSTDKTVKLWDLSNNQPSCVATKEPKAGSVFSISFAEDNPFLLAIGGSKGKIELWDTLAHEGVSRRYEKYSRNQPQSGA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02453 479 PRINTS G protein beta WD-40 repeat signature 398 412 IPR020472 -
Vivi7g02453 479 PRINTS G protein beta WD-40 repeat signature 443 457 IPR020472 -
Vivi7g02453 479 PRINTS G protein beta WD-40 repeat signature 261 275 IPR020472 -
Vivi7g02453 479 SUPERFAMILY WD40 repeat-like 121 456 IPR036322 GO:0005515
Vivi7g02453 479 Gene3D - 41 325 IPR015943 GO:0005515
Vivi7g02453 479 ProSitePatterns Trp-Asp (WD) repeats signature. 261 275 IPR019775 -
Vivi7g02453 479 Pfam Anaphase-promoting complex subunit 4 WD40 domain 240 298 IPR024977 -
Vivi7g02453 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 378 420 IPR001680 GO:0005515
Vivi7g02453 479 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 1 470 IPR044285 GO:0006364
Vivi7g02453 479 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 378 416 - -
Vivi7g02453 479 FunFam Transducin/WD40 repeat-like superfamily protein 67 322 - -
Vivi7g02453 479 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 275 - -
Vivi7g02453 479 Pfam WD domain, G-beta repeat 429 456 IPR001680 GO:0005515
Vivi7g02453 479 Pfam WD domain, G-beta repeat 376 411 IPR001680 GO:0005515
Vivi7g02453 479 Gene3D - 326 476 IPR015943 GO:0005515
Vivi7g02453 479 FunFam Putative WD repeat-containing protein C17D11.16 324 466 - -
Vivi7g02453 479 SMART WD40_4 277 317 IPR001680 GO:0005515
Vivi7g02453 479 SMART WD40_4 232 274 IPR001680 GO:0005515
Vivi7g02453 479 SMART WD40_4 371 411 IPR001680 GO:0005515
Vivi7g02453 479 SMART WD40_4 416 456 IPR001680 GO:0005515
Vivi7g02453 479 SMART WD40_4 321 360 IPR001680 GO:0005515
Vivi7g02453 479 ProSitePatterns Trp-Asp (WD) repeats signature. 398 412 IPR019775 -
Vivi7g02453 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 283 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02453 Vivi-Chr7 88391324 88395593 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02453 258 456 U-box Gene Family AT2G33340 27.317 2.56e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02453 K14791 - gmx:100807947 697.582