Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02452 ATGATCGCCGCAATTTCATGGATTCCCAAAGGAGTCTTCAAAGCCGAACCTGTTTTCGCCGAGCTTCCTTCCAAAGAGGAAATCGAAAAAATCATCTCCAACACGCATGATGTGGATGAAGAGAATGATATGGAAGAAGACACTGACAAAAACAACGATGAAGTCGCACACGCTTTAACAGTAGCTGATGCAATTGCTAAACCATCCAAGGAAAATACTGACGAAATTACCCTCGCCTTGCAAGAGCTCAACATGGAAACCTATGATGAAGAAGATGACAAAGGTTTTGAGTTGTTCAGTTCAGATCTTTATTATCAGAGTAATGAAATGGATCCATATATCAAAGATAAGAAAGAAGAGTATGATTCTGAAGATCTTGAAGACATGGTTATTAATCCAACTGATTCTGTTGTTGTATGCGCACGTACCGAAGACGATGTCAATTTCCTCGAAGTTTGGATACTTGAAGATGCCAATACCCGTGATATGAACTTGTATATTCACCATGATATCATTATTCCGGAATTTCCACTCTGCACGGCTTGGCTGGATTGTCCCCTTAAAGGAGGAGAAAAAGGAAACTTCTTGGCTGTTGGTTCAATGGGACCATCCATAGAAATTTGGGATCTTGATGTTATTGATGAGGTAGAACCATGTGTGGCGTTGGGTGGCATAGAGTCAAGCAAAACGGGGAAAAATGGGAAAAAGAAATCAATAAAATACAGAGAGGACAGTCACACTAGCTCAGTACTTGGTCTTGCTTGGAACAAGGAGTTCAGAAATCTACTTGCAAGTGCTAGTGCTGACAAGAGCGTAAAAATTTGGGACGTCGTCGCTGGAAAGTGTACTCTTACAATGGAGCATCACACTGACAAGGTTCAAGCAGTTGCTTGGAATCATCATAGACAACATGTTCTTCTTAGTGGCTCATTTGATCATACAGTTACCTTGAAGGATGTAAGGAATCCGTCGCATTCAGGCTGTACGTGGTCAGTCGGTGCTGATGTAGAGAGCTTGGCATGGGATCCACACGCTGAGAACCTTTTTGCGGTGAGTCTTGAAGATGGTACAATCAAGTGTTATGATGTCCGGAATGCCATGTCCAATGCCACATCTGAGCAGAGTGCTACTTTTACACTTCATGCACACGACAAATCTGTTACCTCACTAGCCTATAATATGTCAGCACCTAATCTTCTTGCTACCGGATCCACGGATAAAACGGTAAAACTATGGGATTTGTCCAACAACCAACCATCTTGTGTCGCAACCAAAGAACCAAAAGCTGGGTCTGTCTTTTCTATCTCTTTTGCAGAGGACAATCCATTCTTGTTGGCAATAGGAGGCTCAAAGGGAAAAATAGAATTATGGGACACCTTAGCTCACGAAGGTGTCTCTCGAAGATACGAGAAATACAGCAGGAACCAACCTCAATCCGGGGCCTGA 1446 0.4267 MIAAISWIPKGVFKAEPVFAELPSKEEIEKIISNTHDVDEENDMEEDTDKNNDEVAHALTVADAIAKPSKENTDEITLALQELNMETYDEEDDKGFELFSSDLYYQSNEMDPYIKDKKEEYDSEDLEDMVINPTDSVVVCARTEDDVNFLEVWILEDANTRDMNLYIHHDIIIPEFPLCTAWLDCPLKGGEKGNFLAVGSMGPSIEIWDLDVIDEVEPCVALGGIESSKTGKNGKKKSIKYREDSHTSSVLGLAWNKEFRNLLASASADKSVKIWDVVAGKCTLTMEHHTDKVQAVAWNHHRQHVLLSGSFDHTVTLKDVRNPSHSGCTWSVGADVESLAWDPHAENLFAVSLEDGTIKCYDVRNAMSNATSEQSATFTLHAHDKSVTSLAYNMSAPNLLATGSTDKTVKLWDLSNNQPSCVATKEPKAGSVFSISFAEDNPFLLAIGGSKGKIELWDTLAHEGVSRRYEKYSRNQPQSGA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02452 481 ProSitePatterns Trp-Asp (WD) repeats signature. 263 277 IPR019775 -
Vivi7g02452 481 Gene3D - 330 478 IPR015943 GO:0005515
Vivi7g02452 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 380 422 IPR001680 GO:0005515
Vivi7g02452 481 Pfam WD domain, G-beta repeat 378 413 IPR001680 GO:0005515
Vivi7g02452 481 Pfam WD domain, G-beta repeat 431 458 IPR001680 GO:0005515
Vivi7g02452 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 243 277 - -
Vivi7g02452 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 285 IPR001680 GO:0005515
Vivi7g02452 481 FunFam Transducin/WD40 repeat-like superfamily protein 69 324 - -
Vivi7g02452 481 SMART WD40_4 323 362 IPR001680 GO:0005515
Vivi7g02452 481 SMART WD40_4 234 276 IPR001680 GO:0005515
Vivi7g02452 481 SMART WD40_4 373 413 IPR001680 GO:0005515
Vivi7g02452 481 SMART WD40_4 418 458 IPR001680 GO:0005515
Vivi7g02452 481 SMART WD40_4 279 319 IPR001680 GO:0005515
Vivi7g02452 481 FunFam Putative WD repeat-containing protein C17D11.16 326 468 - -
Vivi7g02452 481 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Vivi7g02452 481 PRINTS G protein beta WD-40 repeat signature 400 414 IPR020472 -
Vivi7g02452 481 PRINTS G protein beta WD-40 repeat signature 445 459 IPR020472 -
Vivi7g02452 481 SUPERFAMILY WD40 repeat-like 123 458 IPR036322 GO:0005515
Vivi7g02452 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 380 418 - -
Vivi7g02452 481 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 1 472 IPR044285 GO:0006364
Vivi7g02452 481 Pfam Anaphase-promoting complex subunit 4 WD40 domain 242 300 IPR024977 -
Vivi7g02452 481 ProSitePatterns Trp-Asp (WD) repeats signature. 400 414 IPR019775 -
Vivi7g02452 481 Gene3D - 43 329 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02452 Vivi-Chr7 88391324 88395593 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02452 260 458 U-box Gene Family AT2G33340 27.317 2.76e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02452 K14791 - gmx:100807947 692.96