Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02424 ATGGCGCAACAACAACTCAACGGCACCACCACCACCACCACCGTGACGGAGTTTCCCTGCAACGCCGAAGGCGTTTGCATGGCGTGCCAAAAGACGCCTGATGAAACCGATTCACTTTTCTGCAAAACTTGCGGATCAAGATGGCACGTTCCGTGTCTCCCTGTTCCTCCGAAGAGTGCTGTTGACTGGGAGTGCAGTGACTGTGCTGTTCCGGTTGAGAACGCGGTTGTGTCTGCTCCGGCTCCGTCTGTTGCCGGCGATCTTGTTTCTGCGATTCGTGCTATTGAAAATGATGCCTCGCTTACTGATGAGGAGAAGGCGAAGAAGCGTCAGGAGCTTGTAGGTGGATCGGTGAAACCGGCCGAGGAGGAGAAGCCGAGTAGGCGGAGTGCTGTGATGGATATCTTTAGTGGTTTGAATTGCTCTACTTGTATGCTTTTGCTTGAGAGGCCTGTTACTACTCCATGTGGGCACAACTTTTGCTTGAAGTGTTTTCAAAAGTGGGTTGGGCAAGGAAAGCGCTCTTGCTCGAATTGTAGGGCTGCGATTCCAGCCAAGATGGCTAGTAATCCTAGGATTAATGCTCAGTTGGCTATGGCTATTCGTATGGCCAAGCTGGCCAAATCGGAAAATGTTGGGACAAGCTCTGTTCCAAAAGTTTATCAGGTTGTTCATAATGATGAGCGCCCTGATCAATGCTACACAACGGAGAGAGCTAAGAAAACAGGCAAGGCTAATGCCTGCAGCGGTAAAATCTTTGTGACAATTCAAAGAGACTATTTTGGACCGATCCTTGCTGAGCATGATCCAAACAGGAACCGTGGGGTTCTTGTTGGTGATACCTGGGAGGATAGGATGGAATGCAGGCAGTGGGGAGCTCATCTTCCTCATGTTGCTGGGATTGCTGGTCAGAGTAATCATGGTGCTCAATCTGTTGCTCTCTCCGGTGGATATATTGATGACGAAGACCATGGTGAGTGGTTCCTTTATACTGGAAGTGGTGGAAGGGATCTCAGTGGTAACAAACGGACCAACAAAAATCAGTCCTTTGATCAGCAGTTTGAGAACATGAATGAGGCGTTGAGACTCAGCTGCAAAAAAGGCTATCCAGTTCGTGTTGTAAGGTCCCACAAGGAGAAACGTTCCAATTATGCACCTGAAGCAGGTGTGAGATATGACGGGGTTTATAGAATTGAGAAATGCTGGCGCAAAGTTGGAAAGCAAGGTCACAAGATGTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCTCCATGGACAAGTGATTTAACTGGAGACCGTCCCCGCAAACTACCTACCATCAAGGAGCTTAAGGGTGCAGTTGATGTTACCGAACGAAAGGGTGACCCATCATGGGACTTTGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCACCACTAAGTAAGAAGCCTATGAACATTGTGGATCCTTTTGATCCTACCAAAATCAAAGTTGTTAAGCCAAAGGCAAAAAAGGTGTCCTTCAAAATCAAGGACAGGCTATTGAAAGAGTTTGGCTGCAATATCTGTCGCAAGGTGTTATCTTCTCCTCTCACTACACCTTGTGCTCACAACTTCTGTAAAGGTTGTCTGGAGGGTGCCTTTTCTGGCCAGAGTTATATCAGGAATAGGAACACCAAAAGTGGACGTGCTTTGCGTACACAGAAGAACATCATGAAATGCCCTACATGTTCAACTGATATAGCTGATTACCTCCAGAATCCACAGGTTAATAGGGAGATGATGGGCGTGATAGAATCACTGCAGCGTCAGGCTGAGGAGATGGCAGAGAGTTCTGGAGAATCAAGTGCTAAAAGTGATGAAGATCTCAAGGCAGAGGAGGAGAGTGATGTTTCAAAACCCTCTGACTCAGGTGAAGAAGTCTTGGAAACAATTAAAGAGAATGATGAGGAGGAGGAGCCACCACAGAAGAAGAGAAAAGGTGCTGGTGGCAAGGCTGTGGCTAATGTGGAGGAATCCATTGATGTGGCAGAAGTGGCTAGCAATGCAGTGGCTTGCAGCTAA 2055 0.4779 MAQQQLNGTTTTTTVTEFPCNAEGVCMACQKTPDETDSLFCKTCGSRWHVPCLPVPPKSAVDWECSDCAVPVENAVVSAPAPSVAGDLVSAIRAIENDASLTDEEKAKKRQELVGGSVKPAEEEKPSRRSAVMDIFSGLNCSTCMLLLERPVTTPCGHNFCLKCFQKWVGQGKRSCSNCRAAIPAKMASNPRINAQLAMAIRMAKLAKSENVGTSSVPKVYQVVHNDERPDQCYTTERAKKTGKANACSGKIFVTIQRDYFGPILAEHDPNRNRGVLVGDTWEDRMECRQWGAHLPHVAGIAGQSNHGAQSVALSGGYIDDEDHGEWFLYTGSGGRDLSGNKRTNKNQSFDQQFENMNEALRLSCKKGYPVRVVRSHKEKRSNYAPEAGVRYDGVYRIEKCWRKVGKQGHKMCRYLFVRCDNEPAPWTSDLTGDRPRKLPTIKELKGAVDVTERKGDPSWDFDEEKGCWLWKKPPPLSKKPMNIVDPFDPTKIKVVKPKAKKVSFKIKDRLLKEFGCNICRKVLSSPLTTPCAHNFCKGCLEGAFSGQSYIRNRNTKSGRALRTQKNIMKCPTCSTDIADYLQNPQVNREMMGVIESLQRQAEEMAESSGESSAKSDEDLKAEEESDVSKPSDSGEEVLETIKENDEEEEPPQKKRKGAGGKAVANVEESIDVAEVASNAVACS 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02424 684 Pfam Zinc finger, C3HC4 type (RING finger) 141 179 - -
Vivi7g02424 684 ProSitePatterns Zinc finger PHD-type signature. 26 68 IPR019786 -
Vivi7g02424 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 77 IPR013083 -
Vivi7g02424 684 SUPERFAMILY FYVE/PHD zinc finger 14 72 IPR011011 -
Vivi7g02424 684 SMART PHD_3 25 69 IPR001965 -
Vivi7g02424 684 SUPERFAMILY PUA domain-like 245 440 IPR015947 -
Vivi7g02424 684 SUPERFAMILY RING/U-box 135 188 - -
Vivi7g02424 684 Coils Coil 588 608 - -
Vivi7g02424 684 CDD RING-HC_ORTHRUS_rpt1 139 184 IPR047498 -
Vivi7g02424 684 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 11 611 IPR045134 -
Vivi7g02424 684 ProSiteProfiles Zinc finger RING-type profile. 141 180 IPR001841 -
Vivi7g02424 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 631 IPR013083 -
Vivi7g02424 684 ProSiteProfiles Zinc finger RING-type profile. 517 575 IPR001841 -
Vivi7g02424 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 208 IPR013083 -
Vivi7g02424 684 ProSiteProfiles YDG domain profile. 271 419 IPR003105 -
Vivi7g02424 684 SUPERFAMILY RING/U-box 508 586 - -
Vivi7g02424 684 Pfam RING-type zinc-finger 517 554 IPR027370 -
Vivi7g02424 684 ProSitePatterns Zinc finger RING-type signature. 532 541 IPR017907 -
Vivi7g02424 684 SMART ring_2 517 574 IPR001841 -
Vivi7g02424 684 SMART ring_2 26 68 IPR001841 -
Vivi7g02424 684 SMART ring_2 141 179 IPR001841 -
Vivi7g02424 684 Pfam SAD/SRA domain 274 422 IPR003105 -
Vivi7g02424 684 MobiDBLite consensus disorder prediction 603 664 - -
Vivi7g02424 684 Gene3D - 242 440 IPR036987 -
Vivi7g02424 684 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 242 437 - -
Vivi7g02424 684 SMART G9a_1 266 423 IPR003105 -
Vivi7g02424 684 MobiDBLite consensus disorder prediction 610 639 - -
Vivi7g02424 684 MobiDBLite consensus disorder prediction 103 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02424 Vivi-Chr7 88142626 88146351 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02424 16 657 C2H2 Transcription Factor Family AT5G39550 56.682 0.0 697