Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02416 ATGGAGATGCAACAGCTTCTTTCCATGGGTTTTCCCGACGAGTTAGCCGCCCAAGCCTTAGCTGCCACCGGCGGTAAATCCACCGTCAAAGCCACCGAATGGATTCTCACTCACAAACCTACCTCCTCCACCACCACCACCAACAACTCTTCACCTTCACCATCTCCACCACCACCACCACCGTCTTCATCATTCGCATTCCAACCGAAACTCGACCGGTTCTTCCAAAACCCAAACCCAAACCCATCTCCACCACAACACATTGAAGAGCAAGAAACTGAAACAGAGGAACCAACCAAACGTATAAAGCTCTCACAGACACAATCTCAAACACCTACACTGCAAAACAACAAACCCTCCTTTTTCTTCAACCGTTCCAAGAAACAAACTCAAACTCAAACCCACACTCATGAACCCTTATACGAACGCTTACGTCCCAGAACATTGGACGATGTTGTCGGGCAGGACCATCTTCTATCAGCAAATTCCATTCTCCGTTCCGCAATCCAACGCAACCGTTTACCTTCTATCCTCTTATGGGGTCCACCTGGCACAGGTAAAACCACTATTGCCAAAGCTATTGTCAATTCTTCAACAACCACTTCAACATTCTATCGTTTTGTGTCTTTATCTGCTGTTACTAGTGGTGTTAAAGATGTTAGAGAAGCTGTTGATGAAGCTAGAAAACTCAGACTCAAAACAAATCAAACTACTGTTCTTTTTGTGGATGAGGTTCATAGGTTTAATAAGTCTCAGCAAGATTCTTTCTTACCTGTTATTGAAGATGGTAGCATTGTTTTCGTTGGTGCTACTACTGAAAACCCTTCTTTTCATTTGATTACACCCCTTTTGTCGCGTTGTCGAGTCCTTACTCTTAACCCTCTTCAACCGCAGCACCTCAGTTTGCTTCTTAACCGTGCTGTTACTGATAGAGATAAAGGGTTGGTGAAAAGTCTCGGTTTTGGTTCTGATTCTGGTTCTGGTTCTTCCCGAGTTGATGTTAGTGTTGGTGAAGATGTGGTTGGTTTTATAGGTAATAATTGTGACGGGGATGCTCGTGTTGCTTTGAATGTATTGGAGATTGCTTCTGTTACAGCAGCTGCTCGGGTACAACATGATAATGGAGAATGCAAGGATGCTGTTATTGTTGTTGCTGTCAGTGTAGAGGATGCAAAGGAGGCACTTCAAAGTAAGCATCTTGCATATGATAAAGCTGGGGAAGAACACTATAATTTGATCAGTGCATTGCACAAGTCTATGAGGGGAAGTGATGCTGATGCAGCGATTTATTGGCTGGCAAGAATGTTAAAAGGAGGTGAAGAGCCACTTTATATTGCACGTAGGCTTGTACGGTTTGCAAGTGAGGATGTTGGTTTGGCTGATCCTTTAGCTCTTAATCAAGCTGTTTCTTGCTACCAAGCTTGTCATTTTATTGGAATGCCAGAGTGCAATGTGATTCTTGCACAATGTGTTGCCTACTTGGCTTTGGCTCCTAAGTCTATAGCGGTTTATAGAGCGATTGGAGATGCTGAGAAGGTAGTGAGGGAATCTGTTGGACAGAATGAAGGGGTGCCTCTTCATCTCAGGAATGCACCGACCAAGTTAATGAAGGAAGTTGGGTATGGGAAGGGATACATATACACTCCTGATAACCCTTCTGCAACACAGAGCTTTTTGCCACCCTCCCTTCAAGGGTTCAAATTCCTCCATTGGCCTGACAGGAATCCTTCTGAATCTGACGGATGA 1746 0.4433 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKPTSSTTTTNNSSPSPSPPPPPPSSSFAFQPKLDRFFQNPNPNPSPPQHIEEQETETEEPTKRIKLSQTQSQTPTLQNNKPSFFFNRSKKQTQTQTHTHEPLYERLRPRTLDDVVGQDHLLSANSILRSAIQRNRLPSILLWGPPGTGKTTIAKAIVNSSTTTSTFYRFVSLSAVTSGVKDVREAVDEARKLRLKTNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPQHLSLLLNRAVTDRDKGLVKSLGFGSDSGSGSSRVDVSVGEDVVGFIGNNCDGDARVALNVLEIASVTAAARVQHDNGECKDAVIVVAVSVEDAKEALQSKHLAYDKAGEEHYNLISALHKSMRGSDADAAIYWLARMLKGGEEPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFIGMPECNVILAQCVAYLALAPKSIAVYRAIGDAEKVVRESVGQNEGVPLHLRNAPTKLMKEVGYGKGYIYTPDNPSATQSFLPPSLQGFKFLHWPDRNPSESDG 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02416 581 SUPERFAMILY post-AAA+ oligomerization domain-like 406 575 IPR008921 GO:0003677|GO:0006260
Vivi7g02416 581 MobiDBLite consensus disorder prediction 34 50 - -
Vivi7g02416 581 Gene3D - 126 293 IPR027417 -
Vivi7g02416 581 Gene3D - 295 381 - -
Vivi7g02416 581 FunFam Replication-associated recombination protein A 128 294 - -
Vivi7g02416 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 373 IPR027417 -
Vivi7g02416 581 MobiDBLite consensus disorder prediction 51 65 - -
Vivi7g02416 581 FunFam AAA-type ATPase family protein 295 378 - -
Vivi7g02416 581 SMART AAA_5 173 295 IPR003593 GO:0016887
Vivi7g02416 581 Gene3D - 2 53 - -
Vivi7g02416 581 Gene3D - 500 579 - -
Vivi7g02416 581 MobiDBLite consensus disorder prediction 22 138 - -
Vivi7g02416 581 PRINTS CbxX/CfqX superfamily signature 227 246 IPR000641 GO:0005524
Vivi7g02416 581 PRINTS CbxX/CfqX superfamily signature 351 363 IPR000641 GO:0005524
Vivi7g02416 581 PRINTS CbxX/CfqX superfamily signature 176 191 IPR000641 GO:0005524
Vivi7g02416 581 Pfam AAA C-terminal domain 333 421 IPR032423 -
Vivi7g02416 581 SUPERFAMILY UBA-like 3 41 IPR009060 GO:0005515
Vivi7g02416 581 Pfam UBA/TS-N domain 4 35 IPR015940 -
Vivi7g02416 581 FunFam Putative AAA family ATPase 396 499 - -
Vivi7g02416 581 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Vivi7g02416 581 Gene3D - 396 499 - -
Vivi7g02416 581 CDD HLD_clamp_RarA 295 396 - -
Vivi7g02416 581 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 577 - -
Vivi7g02416 581 Pfam MgsA AAA+ ATPase C terminal 422 572 IPR021886 -
Vivi7g02416 581 Pfam ATPase family associated with various cellular activities (AAA) 177 289 IPR003959 GO:0005524|GO:0016887
Vivi7g02416 581 CDD AAA 153 288 - -
Vivi7g02416 581 MobiDBLite consensus disorder prediction 102 137 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02416 139 422 Core DNA Replication Machinery Family AT1G77470 23.264 7.85e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02416 K07478 - gmx:100799257 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g02416 7 88092413 88094571 Vivi7g02416 7 88092413 88094571 ECH