Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02403 ATGAGAGAACAAGATAATTCCGATTTCATCATGAAAGAACCTCCATCTTCTCTTTCCGGTAAGAAGAGAAAAGAAACCGAATCATCATCCTCAGGCATACACAACAACAACAACGACAACACTCCTCGTGCTTGTACTGAATGCGGCAAGAAATTCTGGTCATGGAAGGCTCTTTTCGGTCACATGCGTTGCCATCCTGAACGCCAATGGCGCGGTATCAATCCTCCTCCAAATTTCCGACGACATCAACATCATCAACAATATCAACAACAACCGCATACTTATACTCCCAGTCACGGTACTAGTTCTTCTCAGTATTCTATCATGACGCCGGAAGATCACGAAGTTGCTGCATGTTTGCTTTTACTTGCAAATTCAAGTTCGAAGCCGAACAACAAAACGGGGAAGCTTAAGGCGGTTGCTGCTACGGTGGATGATTCAACTTCGGTTATGGATCAAGAGATTCATAACAGTAATAGTAATAGTAATACTCATTTTGTGTGTTCGTGTTGTAACAAGGTGTTTGGATCGCATCAGGCTCTTGGAGGACACAGAGCAAGTCACAAGAATGTCAAGGGCTGTTTCGCCAATACAACAGCAACTTCTTCACCAACAACAACAACAACAGTAACCGCTTCCGGTAGTAGGATGATGACGTGGACACAACAAACTCAAGGCGGAGTAATCGGAGGAGATCATGCTTTTGTTGGTGGTGGTGGTGGTGGAGATCAGCATCATGATGATTATAACCACCACCACGCGATGATGAATTTGATGACGGTGCCGCGTGACGGTTACAATGCTGACGTGGAAGGGGAAACGGTTATTGAGAATAGTGGAGGAGGGGGAGGACATAAGTGTGGAATATGTTTGAGGGTATTTACAACTGGACAAGCACTTGGTGGACATAAGAGGTGTCATTTTGATTCATCTAATTCTGTTGCAACAACAACTTCTAACAAATCATCATCATCATCTCTTAATGTTGATTTGAATTTCCCTTTTCCTCCTCTCCCTCCTCCACCTCCTTCTCCTCCAGATGATGATGATCCTCCTCTCACTCTTGATTTGAAGTTAGGACTTTGA 1086 0.4392 MREQDNSDFIMKEPPSSLSGKKRKETESSSSGIHNNNNDNTPRACTECGKKFWSWKALFGHMRCHPERQWRGINPPPNFRRHQHHQQYQQQPHTYTPSHGTSSSQYSIMTPEDHEVAACLLLLANSSSKPNNKTGKLKAVAATVDDSTSVMDQEIHNSNSNSNTHFVCSCCNKVFGSHQALGGHRASHKNVKGCFANTTATSSPTTTTTVTASGSRMMTWTQQTQGGVIGGDHAFVGGGGGGDQHHDDYNHHHAMMNLMTVPRDGYNADVEGETVIENSGGGGGHKCGICLRVFTTGQALGGHKRCHFDSSNSVATTTSNKSSSSSLNVDLNFPFPPLPPPPPSPPDDDDPPLTLDLKLGL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02403 361 ProSitePatterns Zinc finger C2H2 type domain signature. 287 307 IPR013087 -
Vivi7g02403 361 MobiDBLite consensus disorder prediction 1 42 - -
Vivi7g02403 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 193 IPR013087 -
Vivi7g02403 361 MobiDBLite consensus disorder prediction 72 105 - -
Vivi7g02403 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 285 312 IPR013087 -
Vivi7g02403 361 MobiDBLite consensus disorder prediction 333 350 - -
Vivi7g02403 361 MobiDBLite consensus disorder prediction 80 105 - -
Vivi7g02403 361 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Vivi7g02403 361 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Vivi7g02403 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Vivi7g02403 361 Pfam C2H2-type zinc finger 45 67 - -
Vivi7g02403 361 Pfam C2H2-type zinc finger 285 307 - -
Vivi7g02403 361 Pfam C2H2-type zinc finger 165 189 - -
Vivi7g02403 361 MobiDBLite consensus disorder prediction 310 361 - -
Vivi7g02403 361 SMART c2h2final6 285 307 IPR013087 -
Vivi7g02403 361 SMART c2h2final6 43 65 IPR013087 -
Vivi7g02403 361 SMART c2h2final6 166 188 IPR013087 -
Vivi7g02403 361 SUPERFAMILY beta-beta-alpha zinc fingers 40 68 IPR036236 -
Vivi7g02403 361 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 21 361 - -
Vivi7g02403 361 MobiDBLite consensus disorder prediction 310 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02403 Vivi-Chr7 87941559 87942644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02403 283 361 C2H2 Transcription Factor Family AT4G35280 39.241 8.93e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi7g02403 zf-C2H2_6 6.7e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02403 - - psat:127120980 437.187