Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02402 ATGGAATACGGTGGTGGGATAGTGGACGACGGCGGTGTATTTGGGACGATGGTTGGAGGAGATCAAGGAGATATAATTGAGGAGCTTTTAGGAGAAGGTTGCTGGATTGAAGCTAGTGAGAATAATATGATGGCGATGCAGCAAACTGCATCACCACAGCAACAACAACACTACATGGCGAATAGTATTCCCATTGGAATGGGAGAAGGTGATCATTTCAATCATCATCAAGTTGATCAGGAAAGTGGTTTTGTTGTTGGGAAGAGATGGTGGATCGGGCCGAGGGCGAGTCAAGGTCCATCGACTTCGGTGAAAGAGAGATTAGTAGTTGCTGTTGGTTACTTAAAGGAGTATACAAAGAATTCTTCCAACAACGTTCTTATTCAGATATGGGTGCCTGCTCTAAGGAGGAGATCAGCAATTCATTATCTGCAGCAGGATTCGAGTTCATCTGTTCCGGTTTCTGTGAATCCAAACATGAATGTTCATGTTCGATTCTTTAGAAGCCACGAGTATCCGCGGCATCAGCAACAGCAGCAGCAGTATGGATCTCTTCTAGCACTTCCTGTGTTCGAAAGAGGAAGTGGTACATGTCTAGGTGTGATGGAGTTTGTTATCGCGAATCAAAACCTCATCAATTATCGTCCACAACTCGATCATCTCTCCAATGCTCTCGAGGCTGTTGATTTTAGAAGTAGTAGCCACAACATGAATATTCCACCAGCAGTAAAGGTTTTTGAGGAGTTGTACGAAGCAGCGGTGAATGAGATCGTAGAGGTGTTGGCGTCTGTATGCAAGACTCACAATTTGCCACTAGCGCTAACATGGGCTCCTTGCATACAGCAACAAGGAGGAGGAAAAGGTACTACCGGCGGTGGTGGATGCAGTGTTTCGGTTACAGTTCCAACGGATCAGATGAACAATAATAATCATATGATGATGAGTTGCATATCGACTGTTGATTCAGCTTGTTATGTTGGTGACATGGAGATGTTAGGATTTCAAGAAGCCTGCAGTGAGTATCATCTTTTCAATGGACAAGGAATAGTAGGAACAGCATTCACAACAACCAAGCCTTGTTTCGCAATCGACATTACAGCATTCAGCAAAGCCGAATATCCGCTCGCTCACCACGCGGACATGTTTGGATTACATGCCGCGGTTGCGATTCCATTGAGAAGTGTGTACACTGGTTCTGCAGCTGATTTTGTTTTGGAGTTTTTTCTACCTAAAGATTGCCGCGACACGGAACAACAGAAACAAATGCTCAACTCATTATCCCTTGTTGTTCAACAAGCTTGCAGAAGCTTGCATTTGCATGTTGTTATGGATGATGACAATGCTAATCATCATGAGGATCAAGATCAGTTCACTTTTCCAACGACAACAAATAACTACATGCCTTCTTCTGCATCTGATGCTGCTACTACAGCATCACTGTCACAAGTTGATGCAGCTTCAGGCTGTTCAACTAAAGACACAAATTCATCATCTTGTTCTTGGATTGCACATATGATGGAAGCACAAAACAAAGGAAAAGGCGTGTCGGTGTCGTTGGAGTATCTTCAAGAACCTAAAGAGGAATTCAAAGTCACAACATGTAATTGGGAGAGAGAGGGAAATTCAGTCTTTTCAGAATTTGGACAAGTCCTGCAGCATGATCAGAGCAGTAACTCAAGAGCAAGTGTAGAGGCTGGTGAAGAATCCGGAGGCGGCGGTACCGGTGGTGGTCGCAGGTCATCATCTTCTTCGAGCGGACGAAAGTCAGGCGACAAGCGACGAACCAAGGCCGAGAAGACCATAAGCTTGCCTGTTCTTAGACAATACTTCGCCGGAAGCCTAAAGGACGCCGCAAAGAGCATCGGTGTATGTCCTACAACTCTGAAAAGGATATGCAGACAGCATGGGATAACAAGGTGGCCTTCAAGAAAAATAAAGAAAGTGGGCCATTCTTTGAAGAAGCTTCAACTGGTGATAGATTCTGTTCAAGGTGCTGAGGGTGCTATTCAGATTGGATCTTTCTATGCAAGCTTTCCAGAGTTGAGCACTGCAACTGCTCATGGCGGTGGCGGAGGTGGCAGCAGTGGTGATCACATCAACAACAACAGTTTCTATAACAGCCATGGAGATTTAGTTACTAATTTGAAATCTCCACCTTCTGCATGCAGTCAGACTCATGCAGCAGGAAACAAATCTATTATTAATGGAGATCATCATCATCTTTTGATGACAGAAAACCTTGCAGCTCCTTCAGCAGTTGATGCATTAATGCAGCATGCATCAACTATTAATATCCAAGACTATCAACAACTACAAGAGGATCATGATACCAAACAGTTACTTCTACATTTCAACAACAACAACAACAACAACCAAACCCTACCTCCAAGACCAACTGTAACCTGGAACAACAACAATTCATCATCATCAGGACTATTGGAAAGAGGTGCTTTCAGAGTGAAGGCGACGTTCGCGGACGAGAAGATTAGGTTTAGCTTGCAAGCAGTGTGGTGTTTTAGAGATCTGCAGCTTGAGATAGCAAGGCGTTTTAACCTAACTGATATGAACAATTTGGTTCTCAAGTATTTGGATGATGAAGGAGAATGGGTTGTGTTAGGATGTGATAGTGATCTTGAAGAGTGTAAAGACTTGCATACATCATCTCACACAAGAACCATAAGACTCTCACTTTTTCAAGCTTCTCCTTTGAATAATCTTGCAAACAGCTTCCGCAACAACAGTAGCAGTCCATCTTCCTAG 2760 0.4373 MEYGGGIVDDGGVFGTMVGGDQGDIIEELLGEGCWIEASENNMMAMQQTASPQQQQHYMANSIPIGMGEGDHFNHHQVDQESGFVVGKRWWIGPRASQGPSTSVKERLVVAVGYLKEYTKNSSNNVLIQIWVPALRRRSAIHYLQQDSSSSVPVSVNPNMNVHVRFFRSHEYPRHQQQQQQYGSLLALPVFERGSGTCLGVMEFVIANQNLINYRPQLDHLSNALEAVDFRSSSHNMNIPPAVKVFEELYEAAVNEIVEVLASVCKTHNLPLALTWAPCIQQQGGGKGTTGGGGCSVSVTVPTDQMNNNNHMMMSCISTVDSACYVGDMEMLGFQEACSEYHLFNGQGIVGTAFTTTKPCFAIDITAFSKAEYPLAHHADMFGLHAAVAIPLRSVYTGSAADFVLEFFLPKDCRDTEQQKQMLNSLSLVVQQACRSLHLHVVMDDDNANHHEDQDQFTFPTTTNNYMPSSASDAATTASLSQVDAASGCSTKDTNSSSCSWIAHMMEAQNKGKGVSVSLEYLQEPKEEFKVTTCNWEREGNSVFSEFGQVLQHDQSSNSRASVEAGEESGGGGTGGGRRSSSSSSGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSTATAHGGGGGGSSGDHINNNSFYNSHGDLVTNLKSPPSACSQTHAAGNKSIINGDHHHLLMTENLAAPSAVDALMQHASTINIQDYQQLQEDHDTKQLLLHFNNNNNNNQTLPPRPTVTWNNNNSSSSGLLERGAFRVKATFADEKIRFSLQAVWCFRDLQLEIARRFNLTDMNNLVLKYLDDEGEWVVLGCDSDLEECKDLHTSSHTRTIRLSLFQASPLNNLANSFRNNSSSPSS 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02402 919 ProSiteProfiles PB1 domain profile. 817 900 IPR000270 GO:0005515
Vivi7g02402 919 CDD PB1_NLP 818 899 IPR034891 -
Vivi7g02402 919 Pfam RWP-RK domain 601 648 IPR003035 -
Vivi7g02402 919 ProSiteProfiles RWP-RK domain profile. 587 668 IPR003035 -
Vivi7g02402 919 PANTHER PROTEIN NLP8 66 910 IPR045012 GO:0003700
Vivi7g02402 919 SUPERFAMILY CAD & PB1 domains 806 902 - -
Vivi7g02402 919 MobiDBLite consensus disorder prediction 554 598 - -
Vivi7g02402 919 Pfam PB1 domain 818 899 IPR000270 GO:0005515
Vivi7g02402 919 Gene3D - 816 902 - -
Vivi7g02402 919 SMART PB1_new 817 900 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02402 Vivi-Chr7 87698732 87702232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02402 24 918 NLP Transcription Factor Family AT4G35270 40.279 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vivi7g02402 PB1 7.6e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02402 - - tpra:123881749 1422.14