Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02370 ATGTTAGGGTTTGGAGGAAACAGTTGCAGTGAGATTTCTTCTATGGATCACCATCATCATCATATGATGAACAATATGGAAACTAGTAATAGGAAGTTTCTTTCTTTTCCTTTCAACAATAACAACTCTTCTGGTGTTCAAGATCATCAGCATCATAACTTTACTCACCTGAACAACAATAACAATAACACTTCTACAAGTGTTGTTGTTAGAGATAAGATCATGGCTCATCCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTCAATTGCTTGAAGGTTGGAGCACCACCTGAAGTGGTGGCTAGCTTAGAAGAATCATGTGCTAAATGTGAAATGTTGAATGGCTCTTCAGGAAGGACAGGAAGTAGTTCTTGTATAGGTGAAGATCCAGGTTTGGATCAGTTCATGGAAGCATATTGTGAGATGCTTATCAAGTATGAGCAAGAACTCACTAAACCTTTCAAAGAAGCCATGCTTTTCCTCTCAAGAATTGAGTCTCAGCTTAAGGCTCTCGCTGTTTCAACTGACTTTGGCCAAAGTGAACCACCTTCTATGAATGAGATTGATGTTCATGAAAACAACTTCGATACTCAAGGCGAAGATCAGGAATTAAAAGTGCAGCTGTTGCGCAAGTATAGTGGATATCTCGGCAGTCTCAAGAAAGAGTTCCTGAAGAAGAAAAAGAATGGAAAGTTACCAAAGGAAGCTCGTCAACAACTACTCGATTGGTGGAACCGGCATTACAAATGGCCATATCCATCGGAATCTCAAAAACAAGCACTTGCAGAATCGACAGGGCTAGATTTGAAACAGATCAACAACTGGTTCATCAATCAGAGAAAACGTCACTGGAAACCTTCTGAGGATATGCAATTTGCTGTGATGGATGCCACAAACTACTACATGGAAAATGTAATGTGCAAACCATTTCCCATGGATGCCATGCCTATGCTTCTTTAG 960 0.4031 MLGFGGNSCSEISSMDHHHHHMMNNMETSNRKFLSFPFNNNNSSGVQDHQHHNFTHLNNNNNNTSTSVVVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCEMLNGSSGRTGSSSCIGEDPGLDQFMEAYCEMLIKYEQELTKPFKEAMLFLSRIESQLKALAVSTDFGQSEPPSMNEIDVHENNFDTQGEDQELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDAMPMLL 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02370 319 ProSiteProfiles 'Homeobox' domain profile. 223 286 IPR001356 GO:0003677
Vivi7g02370 319 SMART KNOX2_2 122 173 IPR005541 GO:0003677|GO:0005634
Vivi7g02370 319 SMART HOX_1 225 290 IPR001356 GO:0003677
Vivi7g02370 319 SUPERFAMILY Homeodomain-like 225 297 IPR009057 -
Vivi7g02370 319 CDD homeodomain 235 287 IPR001356 GO:0003677
Vivi7g02370 319 Pfam ELK domain 203 224 IPR005539 GO:0003677
Vivi7g02370 319 SMART KNOX1_2 68 112 IPR005540 GO:0003677|GO:0005634
Vivi7g02370 319 SMART ELK_2 203 224 IPR005539 GO:0003677
Vivi7g02370 319 Pfam KNOX1 domain 70 111 IPR005540 GO:0003677|GO:0005634
Vivi7g02370 319 ProSitePatterns 'Homeobox' domain signature. 261 284 IPR017970 GO:0000981|GO:0006355
Vivi7g02370 319 Gene3D - 221 294 - -
Vivi7g02370 319 Pfam KNOX2 domain 125 171 IPR005541 GO:0003677|GO:0005634
Vivi7g02370 319 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 107 293 - -
Vivi7g02370 319 ProSiteProfiles ELK domain profile. 203 223 IPR005539 GO:0003677
Vivi7g02370 319 Pfam Homeobox KN domain 243 282 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02370 Vivi-Chr7 87251427 87254014 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02370 70 313 Homeobox Transcription Factor Family AT1G62360 67.054 1.62e-108 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vivi7g02370 KNOX2 9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02370 - - mtr:11431352 508.449