Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02369 ATGGATCACCATCATCATCATATGATGAACAATATGGAAACTAGTAATAGGAAGTTTCTTTCTTTTCCTTTCAACAATAACAACTCTTCTGGTGTTCAAGATCATCAGCATCATAACTTTACTCACCTGAACAACAATAACAATAACACTTCTACAAGTGTTGTTGTTAGAGATAAGATCATGGCTCATCCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTCAATTGCTTGAAGGTTGGAGCACCACCTGAAGTGGTGGCTAGCTTAGAAGAATCATGTGCTAAATGTGAAATGTTGAATGGCTCTTCAGGAAGGACAGGAAGTAGTTCTTGTATAGGTGAAGATCCAGGTTTGGATCAGTTCATGGAAGCATATTGTGAGATGCTTATCAAGTATGAGCAAGAACTCACTAAACCTTTCAAAGAAGCCATGCTTTTCCTCTCAAGAATTGAGTCTCAGCTTAAGGCTCTCGCTGTTTCAACTGACTTTGGCCAAAGTGAACCACCTTCTATGAATGAGATTGATGTTCATGAAAACAACTTCGATACTCAAGGCGAAGATCAGGAATTAAAAGTGCAGCTGTTGCGCAAGTATAGTGGATATCTCGGCAGTCTCAAGAAAGAGTTCCTGAAGAAGAAAAAGAATGGAAAGTTACCAAAGGAAGCTCGTCAACAACTACTCGATTGGTGGAACCGGCATTACAAATGGCCATATCCATCGGAATCTCAAAAACAAGCACTTGCAGAATCGACAGGGCTAGATTTGAAACAGATCAACAACTGGTTCATCAATCAGAGAAAACGTCACTGGAAACCTTCTGAGGATATGCAATTTGCTGTGATGGATGCCACAAACTACTACATGGAAAATGTAATGTGCAAACCATTTCCCATGGATGCCATGCCTATGCTTCTTTAG 918 0.4031 MDHHHHHMMNNMETSNRKFLSFPFNNNNSSGVQDHQHHNFTHLNNNNNNTSTSVVVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCEMLNGSSGRTGSSSCIGEDPGLDQFMEAYCEMLIKYEQELTKPFKEAMLFLSRIESQLKALAVSTDFGQSEPPSMNEIDVHENNFDTQGEDQELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDAMPMLL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02369 305 ProSiteProfiles ELK domain profile. 189 209 IPR005539 GO:0003677
Vivi7g02369 305 SMART KNOX2_2 108 159 IPR005541 GO:0003677|GO:0005634
Vivi7g02369 305 Pfam Homeobox KN domain 229 268 IPR008422 GO:0003677|GO:0006355
Vivi7g02369 305 SMART KNOX1_2 54 98 IPR005540 GO:0003677|GO:0005634
Vivi7g02369 305 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 93 279 - -
Vivi7g02369 305 SUPERFAMILY Homeodomain-like 211 283 IPR009057 -
Vivi7g02369 305 Pfam ELK domain 189 210 IPR005539 GO:0003677
Vivi7g02369 305 ProSiteProfiles 'Homeobox' domain profile. 209 272 IPR001356 GO:0003677
Vivi7g02369 305 Gene3D - 207 280 - -
Vivi7g02369 305 CDD homeodomain 221 273 IPR001356 GO:0003677
Vivi7g02369 305 SMART ELK_2 189 210 IPR005539 GO:0003677
Vivi7g02369 305 Pfam KNOX1 domain 56 97 IPR005540 GO:0003677|GO:0005634
Vivi7g02369 305 ProSitePatterns 'Homeobox' domain signature. 247 270 IPR017970 GO:0000981|GO:0006355
Vivi7g02369 305 SMART HOX_1 211 276 IPR001356 GO:0003677
Vivi7g02369 305 Pfam KNOX2 domain 111 157 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02369 Vivi-Chr7 87251427 87254611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02369 56 299 Homeobox Transcription Factor Family AT1G62360 67.054 1.26e-108 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vivi7g02369 KNOX2 8.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02369 - - mtr:11431352 481.485