Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02347 ATGGAGTCAGATCCATATACCATTCTAAAGGGGGTTTCCTTAGTGGTGGAATGTGGAGTCGTTTCTGATCCAGAAGGGCGAGGATGGAGAAAAACCCATTTACTTTGTGAACAAGGAAGAATGAGGCCTACAGACTTGCTTAGAGTTCTGAACAAGCAGTTTCTTGGACTCGCCGGTGACACTGCAAATGTCGTTGCTAAGAAGCTAACATCGCCTCCTCCTCTCGTGTCCCGCAAACCAGCGTTTATAGATGCATTTCTGTACAAGATGAAAAAGAATCCAGAACTTCTGAAGAACAAAAGCATTTGGTCACGGAGATCCACTATCTTGCCAGAATTTGTTGATTCCCAAGTCAAGATTTACAACGGGAAAACCATGATTCGTTGTAAGATCACCGAGGGAAAAGTCGGTCATAAGTTTGGTGAGTTTGCTCTCACCAGGAAACGCAAATCTAGAGACCAACCTAATGCCAAAGTGAAACAACTCAAGAAAAAGAAGTGA 501 0.4351 MESDPYTILKGVSLVVECGVVSDPEGRGWRKTHLLCEQGRMRPTDLLRVLNKQFLGLAGDTANVVAKKLTSPPPLVSRKPAFIDAFLYKMKKNPELLKNKSIWSRRSTILPEFVDSQVKIYNGKTMIRCKITEGKVGHKFGEFALTRKRKSRDQPNAKVKQLKKKK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02347 166 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 71 161 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vivi7g02347 166 ProSitePatterns Ribosomal protein S19 signature. 122 146 IPR020934 GO:0003723
Vivi7g02347 166 SUPERFAMILY Ribosomal protein S19 78 151 IPR023575 GO:0003735|GO:0005840|GO:0006412
Vivi7g02347 166 Gene3D 30s Ribosomal Protein S19; Chain A 76 161 IPR023575 GO:0003735|GO:0005840|GO:0006412
Vivi7g02347 166 FunFam Ribosomal protein S19, mitochondrial 75 161 - -
Vivi7g02347 166 Pfam Ribosomal protein S19 87 150 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vivi7g02347 166 Hamap 30S ribosomal protein S19 [rpsS]. 46 158 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vivi7g02347 166 PRINTS Ribosomal protein S19 family signature 102 121 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vivi7g02347 166 PRINTS Ribosomal protein S19 family signature 134 149 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vivi7g02347 166 PRINTS Ribosomal protein S19 family signature 122 134 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02347 Vivi-Chr7 86886894 86893955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02347 76 156 Cytoplasmic Ribosomal Protein Gene Family AT1G04270 28.916 6.66e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02347 K02965 - gmx:100782150 211.075