Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02345 ATGCAACAACAAGTGGCATCAGAAGTTCAACACCACCAACTCAAGAAAAAGAACCAAGAAACACAGATGTGTAGAAAACTCAAACTAAGTATCACTGATCACAACAACCTCAAACTCACAACCACCGTTGATGACGATGATGTTTGTGACAAAATAGACGGCGAGGATCTCTTCATTCCACCTCTCAATTTTTCTATGGTTGATAATGGCATTTTCCGTTCCGGTTTCCCTGAACCTTCCAACTTCTCGTTCCTTCAAACCCTTGGACTTCGCTCCATCATATATTTGTGCCCTGAACCATATCCAGAAGCTAACATGGAGTTTCTCAAGTCAAATGGAATCAAGCTTTATCACTTTGGAATTGAGGGTCATAAGGAGCCTTTTGTAAACATCCCGGACGATACTATTCGGGAAGCCCTAAAAGTTCTTCTTGATGTAAGGAACCACCCGGTTATAATTCACTGTAAGCGAGGAAAGCACCGAACAGGTTGTTTAGTCGGATGCTATAGAAAGCTCCAAAAATGGTGCTTGTCGTCTGTTTTCGACGAGTACCAACGCTTTGCAGCCGCGAAAGCTCGAGTTTCAGATCAGAGGTTTGTAGAGTTGTTTGATATTTCAAGCTTGAAGCATTTGCCTATACCATTTTCATATTTGAAGAGGTAA 663 0.4178 MQQQVASEVQHHQLKKKNQETQMCRKLKLSITDHNNLKLTTTVDDDDVCDKIDGEDLFIPPLNFSMVDNGIFRSGFPEPSNFSFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLYHFGIEGHKEPFVNIPDDTIREALKVLLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSLKHLPIPFSYLKR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02345 220 FunFam probable tyrosine-protein phosphatase At1g05000 57 207 - -
Vivi7g02345 220 ProSitePatterns Tyrosine specific protein phosphatases active site. 153 163 IPR016130 GO:0016311|GO:0016791
Vivi7g02345 220 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 59 205 IPR029021 -
Vivi7g02345 220 Pfam Tyrosine phosphatase family 59 210 IPR004861 -
Vivi7g02345 220 Gene3D Protein tyrosine phosphatase superfamily 57 207 IPR029021 -
Vivi7g02345 220 CDD PFA-DSP_Siw14 57 204 - -
Vivi7g02345 220 PRINTS Plant and fungal dual specificity phosphatase signature 58 75 IPR020428 GO:0016791
Vivi7g02345 220 PRINTS Plant and fungal dual specificity phosphatase signature 131 145 IPR020428 GO:0016791
Vivi7g02345 220 PRINTS Plant and fungal dual specificity phosphatase signature 95 108 IPR020428 GO:0016791
Vivi7g02345 220 PRINTS Plant and fungal dual specificity phosphatase signature 114 128 IPR020428 GO:0016791
Vivi7g02345 220 ProSiteProfiles Dual specificity protein phosphatase domain profile. 63 217 IPR020422 GO:0006470|GO:0008138
Vivi7g02345 220 PANTHER TYROSINE-PROTEIN PHOSPHATASE 29 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02345 Vivi-Chr7 86847931 86851022 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02345 41 220 Protein tyrosine phosphatase (PTP) family AT4G03960 72.222 1.06e-98 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02345 K18045 - gmx:100814279 361.688