Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02344 ATGCAACAACAAGTGGCATCAGAAGTTCAACACCACCAACTCAAGAAAAAGAACCAAGAAACACAGATGTGTAGAAAACTCAAACTAAGTATCACTGATCACAACAACCTCAAACTCACAACCACCGTTGATGACGATGATGTTTGTGACAAAATAGACGGCGAGGATCTCTTCATTCCACCTCTCAATTTTTCTATGGTTGATAATGGCATTTTCCGTTCCGGTTTCCCTGAACCTTCCAACTTCTCGTTCCTTCAAACCCTTGGACTTCGCTCCATCATATATTTGTGCCCTGAACCATATCCAGAAGCTAACATGGAGTTTCTCAAGTCAAATGGAATCAAGCTTTATCACTTTGGAATTGAGGGTCATAAGGAGCCTTTTGTAAACATCCCGGACGATACTATTCGGGAAGCCCTAAAAGTTCTTCTTGATGTAAGGAACCACCCGGTTATAATTCACTGTAAGCGAGGAAAGCACCGAACAGGTTGTTTAGTCGGATGCTATAGAAAGCTCCAAAAATGGTGCTTGTCGTCTGTTTTCGACGAGTACCAACGCTTTGCAGCCGCGAAAGCTCGAGTTTCAGATCAGAGCTAG 597 0.4305 MQQQVASEVQHHQLKKKNQETQMCRKLKLSITDHNNLKLTTTVDDDDVCDKIDGEDLFIPPLNFSMVDNGIFRSGFPEPSNFSFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLYHFGIEGHKEPFVNIPDDTIREALKVLLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02344 198 PRINTS Plant and fungal dual specificity phosphatase signature 58 75 IPR020428 GO:0016791
Vivi7g02344 198 PRINTS Plant and fungal dual specificity phosphatase signature 131 145 IPR020428 GO:0016791
Vivi7g02344 198 PRINTS Plant and fungal dual specificity phosphatase signature 114 128 IPR020428 GO:0016791
Vivi7g02344 198 PRINTS Plant and fungal dual specificity phosphatase signature 95 108 IPR020428 GO:0016791
Vivi7g02344 198 ProSitePatterns Tyrosine specific protein phosphatases active site. 153 163 IPR016130 GO:0016311|GO:0016791
Vivi7g02344 198 Gene3D Protein tyrosine phosphatase superfamily 57 198 IPR029021 -
Vivi7g02344 198 ProSiteProfiles Dual specificity protein phosphatase domain profile. 63 198 IPR020422 GO:0006470|GO:0008138
Vivi7g02344 198 Pfam Tyrosine phosphatase family 59 197 IPR004861 -
Vivi7g02344 198 CDD PFA-DSP_Siw14 57 197 - -
Vivi7g02344 198 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 59 196 IPR029021 -
Vivi7g02344 198 FunFam probable tyrosine-protein phosphatase At1g05000 57 198 - -
Vivi7g02344 198 PANTHER TYROSINE-PROTEIN PHOSPHATASE 28 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02344 Vivi-Chr7 86847931 86851023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02344 41 197 Protein tyrosine phosphatase (PTP) family AT4G03960 72.611 4.43e-87 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02344 K18045 - gmx:100814279 321.242