LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi7g02344	ATGCAACAACAAGTGGCATCAGAAGTTCAACACCACCAACTCAAGAAAAAGAACCAAGAAACACAGATGTGTAGAAAACTCAAACTAAGTATCACTGATCACAACAACCTCAAACTCACAACCACCGTTGATGACGATGATGTTTGTGACAAAATAGACGGCGAGGATCTCTTCATTCCACCTCTCAATTTTTCTATGGTTGATAATGGCATTTTCCGTTCCGGTTTCCCTGAACCTTCCAACTTCTCGTTCCTTCAAACCCTTGGACTTCGCTCCATCATATATTTGTGCCCTGAACCATATCCAGAAGCTAACATGGAGTTTCTCAAGTCAAATGGAATCAAGCTTTATCACTTTGGAATTGAGGGTCATAAGGAGCCTTTTGTAAACATCCCGGACGATACTATTCGGGAAGCCCTAAAAGTTCTTCTTGATGTAAGGAACCACCCGGTTATAATTCACTGTAAGCGAGGAAAGCACCGAACAGGTTGTTTAGTCGGATGCTATAGAAAGCTCCAAAAATGGTGCTTGTCGTCTGTTTTCGACGAGTACCAACGCTTTGCAGCCGCGAAAGCTCGAGTTTCAGATCAGAGCTAG	597	0.4305	MQQQVASEVQHHQLKKKNQETQMCRKLKLSITDHNNLKLTTTVDDDDVCDKIDGEDLFIPPLNFSMVDNGIFRSGFPEPSNFSFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLYHFGIEGHKEPFVNIPDDTIREALKVLLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQS	198

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi7g02344	198	PRINTS	Plant and fungal dual specificity phosphatase signature	58	75	IPR020428	GO:0016791
	Vivi7g02344	198	PRINTS	Plant and fungal dual specificity phosphatase signature	131	145	IPR020428	GO:0016791
	Vivi7g02344	198	PRINTS	Plant and fungal dual specificity phosphatase signature	114	128	IPR020428	GO:0016791
	Vivi7g02344	198	PRINTS	Plant and fungal dual specificity phosphatase signature	95	108	IPR020428	GO:0016791
	Vivi7g02344	198	ProSitePatterns	Tyrosine specific protein phosphatases active site.	153	163	IPR016130	GO:0016311\|GO:0016791
	Vivi7g02344	198	Gene3D	Protein tyrosine phosphatase superfamily	57	198	IPR029021	-
	Vivi7g02344	198	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	63	198	IPR020422	GO:0006470\|GO:0008138
	Vivi7g02344	198	Pfam	Tyrosine phosphatase family	59	197	IPR004861	-
	Vivi7g02344	198	CDD	PFA-DSP_Siw14	57	197	-	-
	Vivi7g02344	198	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	59	196	IPR029021	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi7g02344	Vivi-Chr7	86847931	86851023	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi7g02344	41	197	Protein tyrosine phosphatase (PTP) family	AT4G03960	72.611	4.43e-87	253

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi7g02344	K18045		-	gmx:100814279	321.242

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