Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02340 ATGGCTCGAGTGAAAGGCCGCGTAGATCGAACCCCGGCTCCCAACCCGAATCCTGCCGAGGTGCCGGAAATCCGCTACCGCGGCGTTCGGAAGCGGCCATGGGGCCGATACGCAGCGGAGATAAGAGATCCGTGGAAGAAAGCCCGTGTCTGGTTGGGCACTTTTGATACTGCAATTCAAGCGGCCCGGGCTTACGACACAGCTGCTATCTCCTTCCGTGGGGCAAAGGCGAAGACCAATTTCCCTATCCCTCCTGAGGTTCTTGCGGCTCTGCATCCTCTTCCTCCTCCACCTCCGGTTAACCGTAGGCCAAGACAACACGTGCTTGCCGCCCCACTGGACAACACGGTTTATTTCAATTATCCTACTTCGAGCGGGATGAGTAGCACCGTGGAGTCATTCAGTGGGCCTATGGTGGGTTCTTCTTCTAGAGTTCATGTGTTTGCTCCGGTTAATCCTAGACCGGTTGTTGCTGCTGGTGGTGGTGAAGGTTATCACAGTGATTGTGATTCCTCTTCTTCTGTGGTGGATGCTGATGACGATGAAGACTGTGTTATCATTTATTCATCAGCGGTTCGGAAGCAGCCTCGCAATATTGATCTCAATTTGCCTGCTCCGATGTTCTACAAGAATAATGAAGAGATCCGGGCCACCGACCTCCACCTCTGA 669 0.5366 MARVKGRVDRTPAPNPNPAEVPEIRYRGVRKRPWGRYAAEIRDPWKKARVWLGTFDTAIQAARAYDTAAISFRGAKAKTNFPIPPEVLAALHPLPPPPPVNRRPRQHVLAAPLDNTVYFNYPTSSGMSSTVESFSGPMVGSSSRVHVFAPVNPRPVVAAGGGEGYHSDCDSSSSVVDADDDEDCVIIYSSAVRKQPRNIDLNLPAPMFYKNNEEIRATDLHL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02340 222 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Vivi7g02340 222 MobiDBLite consensus disorder prediction 1 21 - -
Vivi7g02340 222 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Vivi7g02340 222 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Vivi7g02340 222 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Vivi7g02340 222 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Vivi7g02340 222 FunFam Ethylene-responsive transcription factor 2 25 83 - -
Vivi7g02340 222 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Vivi7g02340 222 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 189 - -
Vivi7g02340 222 CDD AP2 25 83 IPR001471 GO:0003700|GO:0006355
Vivi7g02340 222 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02340 Vivi-Chr7 86647790 86648459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02340 23 87 AP2-EREBP Transcription Factor Family AT3G15210 84.615 4.58e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi7g02340 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02340 K09286 - gmx:100812313 152.525