Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02339 ATGAAAATAATTGAAGATATAGATCAGGTTTTACACGGAGATTTATCCGCGGAAGATGTTATCTTCCAAATATCTAAGATTGACGATATGACAAAAAAGGAGGTTGACAATTTTTGTGAAGTAATTAATACTCTCCATGCAAAACACAAAGAATATACTGCTGGCATTCAGAATTATATAGACGAGTGCTTACGAGATCAATCTGACATAAAACACCTTAAAGGAGAGCTTGACGAGATCGCGGCTGAACTTGAAAAGAGTAGAAGAAAACTAGTTAGTCTGAAAATGCAAAAGGATGCAGCTATGGGAATGAATTCCTCCAGTGCAGATGCAGTGAATGGAAACGTGTCTCCTGAAAAGCCTGCTGACAGAGCCATGGGGTTGCCTGAGTTGAAGAATTTAATTGAGGAAGCCAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATGCTCGGGAAAAAAATCAAATCTTGACGAAGCAGTTCCAAGAACTTCAGAATGAACTGAATGATGATAAATATGTACGCTCTTCCCGAGTATATTCTTTAGCAAATGATCAACTTCAACATTGGATTGCGGAATTGGATCGATATAAATCATTGGTGGACTCTCTGCAGTCTGGAAAGGCTAATATCGCAAAATGGGAAAAGGAGCTGAATCTTAAATTGGAGTCTTGTGATAATGCAAGGCGCATACTTGACAATTTTGACTCCAGGACTGATGAGCTCGAGCTGCAGTTGGAGAAATGTATTATTGAAAGGAATCATCTTGAAATTAAGATGGAAGAGGCAAAACAGGATACTGGGAGAAAAGATATCAAAGCCGAGTTTCGTGTGATGGCCTCGGCTTTATCTAAAGAAATGGGGATGATGGAAGCACAATTAAAGCGATGGAAGGATGCTGCTCTTGAAGCTGTATCATTGCGTGAGAAAGCACATTCACTAAGAGCAGAATTGAGTGGGAAGGCAAGCGAACTCCAGAGCCTTTCAAACAAATGTGCCGATCAGGTTTTGGAAATAAAGTCTTCAAAAGCATTGATTGAAAAGTTACAGCAGGAGAATCAGGAGTTGGAATTTGTTCTCGATATGTATGGCGGAGAGGATTATCAAAAAAGCTTGCTAGAAGTTAGAGAATCTGAAAGTAAAGCTCGCTCCCAAGCCGAAATGCTGATAAATGCTTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCCGCCGCAGAAGCTGAAAAGGAGGAATTAAGGGCCCAGCTTGATGAAACTGAAAGAAAAAAATCGGAGCTGGCTGAGGCTATTAAAGTTAAAGAGGCCGAGGCAGAGACCTATATCTCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGCACCAACATCTGTTGCAGCAGGTGGCTGAGAGGGACGACTATAATATCAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAGTTACATAGTGCTTTACTGTCTGAAAAGCAAGCTTTAGCAGATCAACTTAAACAGATTAATTCTTTGATAGAAAATTCAAAGAAAAAGATTGCAAGTAGTGTAGAGCAGCAGATAGAATGTCTTCTATCAGAAGCAGCCAAATGTACTCAAGAGGAAAAACACATTGCAGCCGCTTTAGAGTTTGCCAGGAGGGAATTGGCTGATGCTGAGAAGGAGTTGAAGTTGCTCAAGTCTATTGCTTCATCCTCAGAGAAAGAATACGACCAAATTCAGAAAGATGTGGAAGCTTTTGAAAAGGAATTGGATAGTGAAAGGAGTTCACGGAAGAAGCTTGAGGAGGAACTAATGGAATTGAATAACCAAATTGCTGAGCTGAAAGCTGAAACTGAAGAGACCGCGGTACAACAACTTGAAGAAGAAATAAGAGTTTGCAAGAACATGATCAAATGTACTGTCTGTTCTGATCGTCCAAAGGAGGTTGTGATTTTGAAGTGCTACCATCTGTTCTGCAATCCATGCATACAAAGAAATCTTGAACTCCGTCACCGCAAATGTCCTGCCTGTGGAACAGCATTTGGACAGAGTGATGTTCGCTTTGTTAAAATTTGA 2109 0.4045 MKIIEDIDQVLHGDLSAEDVIFQISKIDDMTKKEVDNFCEVINTLHAKHKEYTAGIQNYIDECLRDQSDIKHLKGELDEIAAELEKSRRKLVSLKMQKDAAMGMNSSSADAVNGNVSPEKPADRAMGLPELKNLIEEAKIVDADRLSELQDAREKNQILTKQFQELQNELNDDKYVRSSRVYSLANDQLQHWIAELDRYKSLVDSLQSGKANIAKWEKELNLKLESCDNARRILDNFDSRTDELELQLEKCIIERNHLEIKMEEAKQDTGRKDIKAEFRVMASALSKEMGMMEAQLKRWKDAALEAVSLREKAHSLRAELSGKASELQSLSNKCADQVLEIKSSKALIEKLQQENQELEFVLDMYGGEDYQKSLLEVRESESKARSQAEMLINALDEHGLELRVRAANEAEAACEQRLSAAEAEKEELRAQLDETERKKSELAEAIKVKEAEAETYISEIETIGQAYEDMQTQHQHLLQQVAERDDYNIKLVSESVKAKQLHSALLSEKQALADQLKQINSLIENSKKKIASSVEQQIECLLSEAAKCTQEEKHIAAALEFARRELADAEKELKLLKSIASSSEKEYDQIQKDVEAFEKELDSERSSRKKLEEELMELNNQIAELKAETEETAVQQLEEEIRVCKNMIKCTVCSDRPKEVVILKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02339 702 ProSiteProfiles Zinc finger RING-type profile. 650 688 IPR001841 -
Vivi7g02339 702 Coils Coil 404 452 - -
Vivi7g02339 702 Coils Coil 241 268 - -
Vivi7g02339 702 Coils Coil 149 169 - -
Vivi7g02339 702 SUPERFAMILY RING/U-box 649 693 - -
Vivi7g02339 702 Coils Coil 334 368 - -
Vivi7g02339 702 SMART ring_2 650 688 IPR001841 -
Vivi7g02339 702 CDD RING-HC_Bre1-like 642 698 - -
Vivi7g02339 702 Pfam Zinc finger, C3HC4 type (RING finger) 649 691 - -
Vivi7g02339 702 MobiDBLite consensus disorder prediction 103 124 - -
Vivi7g02339 702 ProSitePatterns Zinc finger RING-type signature. 665 674 IPR017907 -
Vivi7g02339 702 Coils Coil 509 529 - -
Vivi7g02339 702 Coils Coil 70 97 - -
Vivi7g02339 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 701 IPR013083 -
Vivi7g02339 702 Coils Coil 531 647 - -
Vivi7g02339 702 PANTHER RING FINGER PROTEIN-RELATED 5 702 IPR013956 GO:0004842|GO:0010390
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02339 Vivi-Chr7 86602512 86618031 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02339 623 697 RAD5 or RAD16-like Gene Family AT5G05130 26.190 1.57e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02339 K10696 - gmx:100796610 1016.91